3ubv: Difference between revisions

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[[Image:3ubv.jpg|left|200px]]


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==Oxygen-bound hell's gate globin I by classical hanging drop==
The line below this paragraph, containing "STRUCTURE_3ubv", creates the "Structure Box" on the page.
<StructureSection load='3ubv' size='340' side='right'caption='[[3ubv]], [[Resolution|resolution]] 3.20&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3ubv]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylacidiphilum_infernorum_V4 Methylacidiphilum infernorum V4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UBV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UBV FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=HEM:PROTOPORPHYRIN+IX+CONTAINING+FE'>HEM</scene>, <scene name='pdbligand=OXY:OXYGEN+MOLECULE'>OXY</scene></td></tr>
{{STRUCTURE_3ubv|  PDB=3ubv  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ubv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ubv OCA], [https://pdbe.org/3ubv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ubv RCSB], [https://www.ebi.ac.uk/pdbsum/3ubv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ubv ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/B3DUZ7_METI4 B3DUZ7_METI4]
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
X-ray atomic structure of recombinant Hell's gate globin I (HGbI) from Methylacidophilum infernorum was calculated from the X-ray diffraction data of two different types of crystals: obtained by classical hanging drop and by LB nanotemplate method under the same crystallization conditions. After the accurate comparison of crystallographic parameters and electron density maps of two structures they appears to be quite similar, while the quality of the crystals grown by LB nanotemplate method was higher then of those grown by classical method. Indeed, the resolution of the LB crystal structure was 1.65 A, while classical crystals showed only 3.2 A resolution. Moreover, the reproducibility of this result in the case of LB crystals was much better - nine crystals from ten gave the same structural results, while only two of ten classical crystals were appropriate for the X ray structure resolution. J. Cell. Biochem. (c) 2012 Wiley Periodicals, Inc.


===Oxygen-bound hell's gate globin I by classical hanging drop===
Oxygen-bound Hell's gate globin I by classical versus LB nanotemplate method.,Pechkova E, Scudieri D, Belmonte L, Nicolini C J Cell Biochem. 2012 Mar 13. doi: 10.1002/jcb.24131. PMID:22415930<ref>PMID:22415930</ref>


 
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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The line below this paragraph, {{ABSTRACT_PUBMED_22415930}}, adds the Publication Abstract to the page
<div class="pdbe-citations 3ubv" style="background-color:#fffaf0;"></div>
(as it appears on PubMed at http://www.pubmed.gov), where 22415930 is the PubMed ID number.
== References ==
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<references/>
{{ABSTRACT_PUBMED_22415930}}
__TOC__
 
</StructureSection>
==About this Structure==
[[Category: Large Structures]]
[[3ubv]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Methylacidiphilum_infernorum_v4 Methylacidiphilum infernorum v4]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UBV OCA].
[[Category: Methylacidiphilum infernorum V4]]
 
[[Category: Alam M]]
==Reference==
[[Category: Belmonte L]]
<ref group="xtra">PMID:022415930</ref><references group="xtra"/>
[[Category: Nicolini C]]
[[Category: Methylacidiphilum infernorum v4]]
[[Category: Pechkova E]]
[[Category: Alam, M.]]
[[Category: Saito JA]]
[[Category: Belmonte, L.]]
[[Category: Scudieri D]]
[[Category: Nicolini, C.]]
[[Category: Pechkova, E.]]
[[Category: Saito, J A.]]
[[Category: Scudieri, D.]]
[[Category: Autoxidation]]
[[Category: Globin]]
[[Category: Oxygen]]
[[Category: Oxygen transport]]
[[Category: Oxygen-bound]]

Latest revision as of 10:22, 13 August 2026

Oxygen-bound hell's gate globin I by classical hanging drop

3ubv, resolution 3.20Å

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