3vmm: Difference between revisions

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[[Image:3vmm.jpg|left|200px]]


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==Crystal structure of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis==
The line below this paragraph, containing "STRUCTURE_3vmm", creates the "Structure Box" on the page.
<StructureSection load='3vmm' size='340' side='right'caption='[[3vmm]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3vmm]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VMM FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=P0D:(2S)-3-[(S)-[(1R)-1-AMINOETHYL](PHOSPHONOOXY)PHOSPHORYL]-2-BENZYLPROPANOIC+ACID'>P0D</scene></td></tr>
{{STRUCTURE_3vmm|  PDB=3vmm  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vmm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmm OCA], [https://pdbe.org/3vmm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vmm RCSB], [https://www.ebi.ac.uk/pdbsum/3vmm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmm ProSAT]</span></td></tr>
 
</table>
===Crystal structure of BacD, an L-amino acid dipeptide ligase from Bacillus subtilis===
== Function ==
 
[https://www.uniprot.org/uniprot/BACD_BACSU BACD_BACSU] Catalyzes the formation of alpha-dipeptides from various L-amino acids in the presence of ATP. Has a broad substrate specificity. Does not accept lysine, arginine, glutamate, aspartate and proline as a substrate. Probably catalyzes the ligation of L-alanine and L-anticapsin to produce the final bacilysin antibiotic.
 
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</StructureSection>
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(as it appears on PubMed at http://www.pubmed.gov), where 22407814 is the PubMed ID number.
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{{ABSTRACT_PUBMED_22407814}}
 
==About this Structure==
[[3vmm]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMM OCA].  
 
==Reference==
<ref group="xtra">PMID:022407814</ref><references group="xtra"/>
[[Category: Bacillus subtilis]]
[[Category: Bacillus subtilis]]
[[Category: L-amino-acid alpha-ligase]]
[[Category: Large Structures]]
[[Category: Higuchi, Y.]]
[[Category: Higuchi Y]]
[[Category: Shomura, Y.]]
[[Category: Shomura Y]]
[[Category: Amino acid ligase]]
[[Category: Atp binding]]
[[Category: Atp-grasp domain]]
[[Category: Ligase]]
Retrieved from "https://proteopedia.org/3vmm"