3s5v: Difference between revisions

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[[Image:3s5v.png|left|200px]]


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==Structure of the cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) in free state obtained at -180 degrees Celsius==
The line below this paragraph, containing "STRUCTURE_3s5v", creates the "Structure Box" on the page.
<StructureSection load='3s5v' size='340' side='right'caption='[[3s5v]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3s5v]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Planktothrix_agardhii Planktothrix agardhii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S5V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3S5V FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
{{STRUCTURE_3s5v|  PDB=3s5v  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3s5v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3s5v OCA], [https://pdbe.org/3s5v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3s5v RCSB], [https://www.ebi.ac.uk/pdbsum/3s5v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3s5v ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/LEC1_PLAAG LEC1_PLAAG] Lectin specific for high mannose N-glycans, recognizes the branched moiety of these glycans. Does not recognize other types of N-glycans or monosaccharides. Agglutinates trypsin-treated rabbit erythrocytes. Does not require divalent cations for activity. Inhibits HIV replication in MT4 cells with an EC(50) of 45 nM. Binds to the HIV envelope glycoprotein gp120.<ref>PMID:10817903</ref> <ref>PMID:17314091</ref>  


===Structure of the cyanobacterial Oscillatoria Agardhii Agglutinin (OAA) in free state obtained at -180 degrees Celsius===
==See Also==
 
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
 
== References ==
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<references/>
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(as it appears on PubMed at http://www.pubmed.gov), where 21827952 is the PubMed ID number.
</StructureSection>
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[[Category: Large Structures]]
{{ABSTRACT_PUBMED_21827952}}
 
==About this Structure==
[[3s5v]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Planktothrix_agardhii Planktothrix agardhii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3S5V OCA].
 
==Reference==
<ref group="xtra">PMID:021827952</ref><ref group="xtra">PMID:020961847</ref><references group="xtra"/>
[[Category: Planktothrix agardhii]]
[[Category: Planktothrix agardhii]]
[[Category: Gronenborn, A M.]]
[[Category: Gronenborn AM]]
[[Category: Koharudin, L M.I.]]
[[Category: Koharudin LMI]]
[[Category: Anti-hiv lectin]]
[[Category: Beta barrel like fold]]
[[Category: Carbohydrate]]
[[Category: Protein binding]]
Retrieved from "https://proteopedia.org/3s5v"