3umv: Difference between revisions

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[[Image:3umv.png|left|200px]]


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==Eukaryotic Class II CPD photolyase structure reveals a basis for improved UV-tolerance in plants==
The line below this paragraph, containing "STRUCTURE_3umv", creates the "Structure Box" on the page.
<StructureSection load='3umv' size='340' side='right'caption='[[3umv]], [[Resolution|resolution]] 1.71&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3umv]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Japonica_Group Oryza sativa Japonica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UMV OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UMV FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.705&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=URE:UREA'>URE</scene></td></tr>
{{STRUCTURE_3umv|  PDB=3umv  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3umv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3umv OCA], [https://pdbe.org/3umv PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3umv RCSB], [https://www.ebi.ac.uk/pdbsum/3umv PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3umv ProSAT]</span></td></tr>
 
</table>
===Eukaryotic Class II CPD photolyase structure reveals a basis for improved UV-tolerance in plants===
== Function ==
 
[https://www.uniprot.org/uniprot/PHR_ORYSJ PHR_ORYSJ] Involved in repair of UV radiation-induced DNA damage. Catalyzes the light-dependent monomerization (300-600 nm) of cyclobutylpyrimidine dimers (CPDs), which are formed between adjacent bases on the same DNA strand upon exposure to ultraviolet radiation. Required for plant survival in the presence of UV-B light. Not involved in the repair of (6-4) photoproducts.<ref>PMID:12764611</ref> <ref>PMID:15965242</ref> <ref>PMID:17895582</ref> <ref>PMID:17397507</ref> <ref>PMID:18235036</ref> <ref>PMID:20227927</ref>
 
== References ==
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<references/>
The line below this paragraph, {{ABSTRACT_PUBMED_22170053}}, adds the Publication Abstract to the page
__TOC__
(as it appears on PubMed at http://www.pubmed.gov), where 22170053 is the PubMed ID number.
</StructureSection>
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[[Category: Large Structures]]
{{ABSTRACT_PUBMED_22170053}}
[[Category: Oryza sativa Japonica Group]]
 
[[Category: Arvai AS]]
==About this Structure==
[[Category: Getzoff ED]]
[[3umv]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Oryza_sativa_japonica_group Oryza sativa japonica group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UMV OCA].  
[[Category: Hitomi K]]
 
[[Category: Tainer JA]]
==Reference==
<ref group="xtra">PMID:022170053</ref><references group="xtra"/>
[[Category: Deoxyribodipyrimidine photo-lyase]]
[[Category: Oryza sativa japonica group]]
[[Category: Arvai, A S.]]
[[Category: Getzoff, E D.]]
[[Category: Hitomi, K.]]
[[Category: Tainer, J A.]]
[[Category: Cpd cyclobutane pyrimidine dimer]]
[[Category: Dna repair]]
[[Category: Flavoprotein]]
[[Category: Lyase]]
[[Category: Uv damaged dna]]
Retrieved from "https://proteopedia.org/3umv"