2kdb: Difference between revisions

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[[Image:2kdb.png|left|200px]]


<!--
==Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A==
The line below this paragraph, containing "STRUCTURE_2kdb", creates the "Structure Box" on the page.
<StructureSection load='2kdb' size='340' side='right'caption='[[2kdb]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2kdb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KDB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2KDB FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2kdb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2kdb OCA], [https://pdbe.org/2kdb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2kdb RCSB], [https://www.ebi.ac.uk/pdbsum/2kdb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2kdb ProSAT], [https://www.topsan.org/Proteins/NESGC/2kdb TOPSAN]</span></td></tr>
{{STRUCTURE_2kdb|  PDB=2kdb  |  SCENE=  }}
</table>
 
== Function ==
===Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A===
[https://www.uniprot.org/uniprot/HERP2_HUMAN HERP2_HUMAN] Could be involved in the unfolded protein response (UPR) pathway (By similarity).
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_21161328}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 21161328 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kd/2kdb_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_21161328}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2kdb ConSurf].
[[2kdb]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2KDB OCA].  
<div style="clear:both"></div>
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:021161328</ref><references group="xtra"/>
[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
[[Category: Arrowsmith, C.]]
[[Category: Large Structures]]
[[Category: Dhe-Paganon, S.]]
[[Category: Arrowsmith C]]
[[Category: Doherty, R.]]
[[Category: Dhe-Paganon S]]
[[Category: Fares, C.]]
[[Category: Doherty R]]
[[Category: Gutmanas, A.]]
[[Category: Fares C]]
[[Category: Lemak, A.]]
[[Category: Gutmanas A]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Lemak A]]
[[Category: SGC, Structural Genomics Consortium.]]
[[Category: Semesi A]]
[[Category: Semesi, A.]]
[[Category: Wu B]]
[[Category: Wu, B.]]
[[Category: Yee A]]
[[Category: Yee, A.]]
[[Category: Membrane]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Ocsp]]
[[Category: Ontario centre for structural proteomic]]
[[Category: Protein binding]]
[[Category: Protein structure initiative]]
[[Category: Psi-2]]
[[Category: Sgc]]
[[Category: Structural genomic]]
[[Category: Transmembrane]]
[[Category: Ubl domain]]
[[Category: Unfolded protein response]]
[[Category: Unknown function]]

Latest revision as of 06:45, 1 May 2024

Solution Structure of human ubiquitin-like domain of Herpud2_9_85, Northeast Structural Genomics Consortium (NESG) target HT53A

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