3vrt: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3vrt.jpg|left|200px]]


<!--
==VDR ligand binding domain in complex with 2-Mehylidene-19,25,26,27-tetranor-1alpha,24-dihydroxyvitaminD3==
The line below this paragraph, containing "STRUCTURE_3vrt", creates the "Structure Box" on the page.
<StructureSection load='3vrt' size='340' side='right'caption='[[3vrt]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)  
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[3vrt]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens] and [https://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VRT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VRT FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=YS2:(1R,3R,7E,17BETA)-17-[(2R)-5-HYDROXYPENTAN-2-YL]-2-METHYLIDENE-9,10-SECOESTRA-5,7-DIENE-1,3-DIOL'>YS2</scene></td></tr>
{{STRUCTURE_3vrt|  PDB=3vrt  |  SCENE= }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vrt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vrt OCA], [https://pdbe.org/3vrt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vrt RCSB], [https://www.ebi.ac.uk/pdbsum/3vrt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vrt ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/VDR_RAT VDR_RAT] Nuclear hormone receptor. Transcription factor that mediates the action of vitamin D3 by controlling the expression of hormone sensitive genes. Regulates transcription of hormone sensitive genes via its association with the WINAC complex, a chromatin-remodeling complex. Recruited to promoters via its interaction with the WINAC complex subunit BAZ1B/WSTF, which mediates the interaction with acetylated histones, an essential step for VDR-promoter association. Plays a central role in calcium homeostasis.<ref>PMID:17227670</ref>


===VDR ligand binding domain in complex with 2-Mehylidene-19,25,26,27-tetranor-1alpha,24-dihydroxyvitaminD3===
==See Also==
 
*[[Sandbox vdr|Sandbox vdr]]
 
*[[Vitamin D receptor 3D structures|Vitamin D receptor 3D structures]]
<!--
== References ==
The line below this paragraph, {{ABSTRACT_PUBMED_22512505}}, adds the Publication Abstract to the page
<references/>
(as it appears on PubMed at http://www.pubmed.gov), where 22512505 is the PubMed ID number.
__TOC__
-->
</StructureSection>
{{ABSTRACT_PUBMED_22512505}}
[[Category: Homo sapiens]]
 
[[Category: Large Structures]]
==About this Structure==
[[3vrt]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Rattus_norvegicus Rattus norvegicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VRT OCA].
 
==Reference==
<ref group="xtra">PMID:022512505</ref><references group="xtra"/>
[[Category: Rattus norvegicus]]
[[Category: Rattus norvegicus]]
[[Category: Inaba, Y.]]
[[Category: Inaba Y]]
[[Category: Ito, N.]]
[[Category: Ito N]]
[[Category: Itoh, T.]]
[[Category: Itoh T]]
[[Category: Nakabayashi, M.]]
[[Category: Nakabayashi M]]
[[Category: Yamamoto, K.]]
[[Category: Yamamoto K]]
[[Category: Yoshimoto, N.]]
[[Category: Yoshimoto N]]
[[Category: Co-factor]]
[[Category: Nuclear]]
[[Category: Rxr]]
[[Category: Transcription]]
[[Category: Vdre]]
[[Category: Vitamin d3]]
Retrieved from "https://proteopedia.org/3vrt"