2ogd: Difference between revisions

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[[Image:2ogd.png|left|200px]]


<!--
==T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-527==
The line below this paragraph, containing "STRUCTURE_2ogd", creates the "Structure Box" on the page.
<StructureSection load='2ogd' size='340' side='right'caption='[[2ogd]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[2ogd]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OGD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2OGD FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-->
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>, <scene name='pdbligand=SUF:[2-(DIMETHYL-LAMBDA~4~-SULFANYL)-1-HYDROXYETHANE-1,1-DIYL]BIS(PHOSPHONIC+ACID)'>SUF</scene></td></tr>
{{STRUCTURE_2ogd|  PDB=2ogd  |  SCENE=  }}
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2ogd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2ogd OCA], [https://pdbe.org/2ogd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2ogd RCSB], [https://www.ebi.ac.uk/pdbsum/2ogd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2ogd ProSAT]</span></td></tr>
 
</table>
===T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-527===
== Function ==
 
[https://www.uniprot.org/uniprot/Q86C09_9TRYP Q86C09_9TRYP]
 
== Evolutionary Conservation ==
==About this Structure==
[[Image:Consurf_key_small.gif|200px|right]]
[[2ogd]] is a 2 chain structure of [[Farnesyl diphosphate synthase]] with sequence from [http://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2OGD OCA].  
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/og/2ogd_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2ogd ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Farnesyl diphosphate synthase|Farnesyl diphosphate synthase]]
*[[Farnesyl diphosphate synthase 3D structures|Farnesyl diphosphate synthase 3D structures]]
[[Category: Geranyltranstransferase]]
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Trypanosoma brucei]]
[[Category: Trypanosoma brucei]]
[[Category: Cao, R.]]
[[Category: Cao R]]
[[Category: Gao, Y.]]
[[Category: Gao Y]]
[[Category: Goddard, A.]]
[[Category: Goddard A]]
[[Category: Oldfield, E.]]
[[Category: Oldfield E]]
[[Category: Robinson, H.]]
[[Category: Robinson H]]
[[Category: Protein-bisphosphonate complex]]
[[Category: Transferase]]

Latest revision as of 10:38, 30 August 2023

T. Brucei Farnesyl Diphosphate Synthase Complexed with Bisphosphonate BPH-527

2ogd, resolution 2.00Å

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