1ywu: Difference between revisions

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[[Image:1ywu.png|left|200px]]


<!--
==Solution NMR structure of Pseudomonas Aeruginosa protein PA4608. Northeast Structural Genomics target PaT7==
The line below this paragraph, containing "STRUCTURE_1ywu", creates the "Structure Box" on the page.
<StructureSection load='1ywu' size='340' side='right'caption='[[1ywu]]' scene=''>
You may change the PDB parameter (which sets the PDB file loaded into the applet)
== Structural highlights ==
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
<table><tr><td colspan='2'>[[1ywu]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YWU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YWU FirstGlance]. <br>
or leave the SCENE parameter empty for the default display.
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
-->
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1ywu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ywu OCA], [https://pdbe.org/1ywu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1ywu RCSB], [https://www.ebi.ac.uk/pdbsum/1ywu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1ywu ProSAT], [https://www.topsan.org/Proteins/NESGC/1ywu TOPSAN]</span></td></tr>
{{STRUCTURE_1ywu|  PDB=1ywu  |  SCENE=  }}
</table>
 
== Function ==
===Solution NMR structure of Pseudomonas Aeruginosa protein PA4608. Northeast Structural Genomics target PaT7===
[https://www.uniprot.org/uniprot/CDGBP_PSEAE CDGBP_PSEAE] Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein.<ref>PMID:17096419</ref> <ref>PMID:21280119</ref> <ref>PMID:21310957</ref>
 
== Evolutionary Conservation ==
 
[[Image:Consurf_key_small.gif|200px|right]]
<!--
Check<jmol>
The line below this paragraph, {{ABSTRACT_PUBMED_17096419}}, adds the Publication Abstract to the page
  <jmolCheckbox>
(as it appears on PubMed at http://www.pubmed.gov), where 17096419 is the PubMed ID number.
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yw/1ywu_consurf.spt"</scriptWhenChecked>
-->
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
{{ABSTRACT_PUBMED_17096419}}
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
==About this Structure==
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1ywu ConSurf].
[[1ywu]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_aeruginosa Pseudomonas aeruginosa]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YWU OCA].  
<div style="clear:both"></div>
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:017096419</ref><references group="xtra"/>
__TOC__
[[Category: Pseudomonas aeruginosa]]
</StructureSection>
[[Category: Arrowsmith, C H.]]
[[Category: Large Structures]]
[[Category: Cort, J R.]]
[[Category: Pseudomonas aeruginosa PAO1]]
[[Category: Kennedy, M A.]]
[[Category: Arrowsmith CH]]
[[Category: NESG, Northeast Structural Genomics Consortium.]]
[[Category: Cort JR]]
[[Category: Ramelot, T A.]]
[[Category: Kennedy MA]]
[[Category: Semesi, A.]]
[[Category: Ramelot TA]]
[[Category: Yee, A A.]]
[[Category: Semesi A]]
[[Category: Beta barrel]]
[[Category: Yee AA]]
[[Category: Nesg]]
[[Category: Northeast structural genomics consortium]]
[[Category: Pa4608]]
[[Category: Pat7]]
[[Category: Pilz domain]]
[[Category: Protein structure initiative]]
[[Category: Psi]]
[[Category: Structural genomic]]
[[Category: Unknown function]]
Retrieved from "https://proteopedia.org/1ywu"