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[[Image:1khq.png|left|200px]]


{{STRUCTURE_1khq| PDB=1khq | SCENE= }}
==ORTHORHOMBIC FORM OF PAPAIN/ZLFG-DAM COVALENT COMPLEX==
<StructureSection load='1khq' size='340' side='right'caption='[[1khq]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1khq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KHQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KHQ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0HQ:DIAZOMETHANE'>0HQ</scene>, <scene name='pdbligand=PHQ:BENZYL+CHLOROCARBONATE'>PHQ</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1khq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1khq OCA], [https://pdbe.org/1khq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1khq RCSB], [https://www.ebi.ac.uk/pdbsum/1khq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1khq ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/PAPA1_CARPA PAPA1_CARPA]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kh/1khq_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1khq ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
The three-dimensional structure of two polymorphs of a ZLFG-CH2-papain covalent complex has been determined by X-ray crystallography. The structures indicate that: (i) the methylene carbon atom of the inhibitor is covalently bound to the Sgamma atom of Cys25 of papain; (ii) the hydrophobic S2 pocket formed by Pro68, Val133, Val157, and Asp158 is occupied by the inhibitor's phenylalanyl P2 side chain; (iii) extensive hydrogen bonding and hydrophobic interactions are responsible for the interaction of the inhibitor with the enzyme. Comparison with similar structures suggests that in covalent complexes preservation of main chain-main chain interactions between the enzyme and the inhibitor may have higher priority than the P-S interactions.


===ORTHORHOMBIC FORM OF PAPAIN/ZLFG-DAM COVALENT COMPLEX===
Two polymorphs of a covalent complex between papain and a diazomethylketone inhibitor.,Janowski R, Kozak M, Jankowska E, Grzonka Z, Jaskolski M J Pept Res. 2004 Oct;64(4):141-50. PMID:15357669<ref>PMID:15357669</ref>


{{ABSTRACT_PUBMED_15357669}}
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
==About this Structure==
<div class="pdbe-citations 1khq" style="background-color:#fffaf0;"></div>
[[1khq]] is a 2 chain structure of [[Papain]] with sequence from [http://en.wikipedia.org/wiki/Carica_papaya Carica papaya]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KHQ OCA].


==See Also==
==See Also==
*[[Papain|Papain]]
*[[Papain|Papain]]
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:015357669</ref><references group="xtra"/>
__TOC__
</StructureSection>
[[Category: Carica papaya]]
[[Category: Carica papaya]]
[[Category: Papain]]
[[Category: Large Structures]]
[[Category: Grzonka, Z.]]
[[Category: Grzonka Z]]
[[Category: Jankowska, E.]]
[[Category: Jankowska E]]
[[Category: Janowski, R.]]
[[Category: Janowski R]]
[[Category: Jaskolski, M.]]
[[Category: Jaskolski M]]
[[Category: Kozak, M.]]
[[Category: Kozak M]]
[[Category: Diazomethylketone inhibitor]]
[[Category: Hydrolase-hydrolase inhibitor complex]]
[[Category: Irreversible inhibitor]]
[[Category: Protease inhibitor]]
Retrieved from "https://proteopedia.org/1khq"