2p87: Difference between revisions
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==Crystal structure of the C-terminal domain of C. elegans pre-mRNA splicing factor Prp8== | |||
<StructureSection load='2p87' size='340' side='right'caption='[[2p87]], [[Resolution|resolution]] 2.30Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2p87]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Caenorhabditis_elegans Caenorhabditis elegans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2P87 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2P87 FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2p87 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2p87 OCA], [https://pdbe.org/2p87 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2p87 RCSB], [https://www.ebi.ac.uk/pdbsum/2p87 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2p87 ProSAT]</span></td></tr> | |||
== | </table> | ||
[[2p87]] is a 1 chain structure | == Function == | ||
[https://www.uniprot.org/uniprot/PRP8_CAEEL PRP8_CAEEL] Functions as a scaffold that mediates the ordered assembly of spliceosomal proteins and snRNAs. Required for the assembly of the U4/U6-U5 tri-snRNP complex. Functions as scaffold that positions spliceosomal U2, U5 and U6 snRNAs at splice sites on pre-mRNA substrates, so that splicing can occur. Interacts with both the 5' and the 3' splice site (By similarity). | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/p8/2p87_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2p87 ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | ==See Also== | ||
*[[Pre-mRNA | *[[Pre-mRNA splicing factors 3D structures|Pre-mRNA splicing factors 3D structures]] | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Caenorhabditis elegans]] | [[Category: Caenorhabditis elegans]] | ||
[[Category: Guarnieri | [[Category: Large Structures]] | ||
[[Category: Heroux | [[Category: Guarnieri MT]] | ||
[[Category: Shen | [[Category: Heroux A]] | ||
[[Category: Yang | [[Category: Shen J]] | ||
[[Category: Zhang | [[Category: Yang K]] | ||
[[Category: Zhao | [[Category: Zhang L]] | ||
[[Category: Zhao R]] | |||
Latest revision as of 09:08, 21 February 2024
Crystal structure of the C-terminal domain of C. elegans pre-mRNA splicing factor Prp8
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