3t3f: Difference between revisions

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[[Image:3t3f.png|left|200px]]


{{STRUCTURE_3t3f|  PDB=3t3f  |  SCENE=  }}
==Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP==
 
<StructureSection load='3t3f' size='340' side='right'caption='[[3t3f]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
===Ternary Structure of the large fragment of Taq DNA polymerase bound to an abasic site and dNITP===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3t3f]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3T3F FirstGlance]. <br>
{{ABSTRACT_PUBMED_22318723}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=3DR:1,2-DIDEOXYRIBOFURANOSE-5-PHOSPHATE'>3DR</scene>, <scene name='pdbligand=DOC:2,3-DIDEOXYCYTIDINE-5-MONOPHOSPHATE'>DOC</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=N5P:1-{2-DEOXY-5-O-[(R)-HYDROXY{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}PHOSPHORYL]-BETA-D-ERYTHRO-PENTOFURANOSYL}-5-NITRO-1H-INDOLE'>N5P</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3t3f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3t3f OCA], [https://pdbe.org/3t3f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3t3f RCSB], [https://www.ebi.ac.uk/pdbsum/3t3f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3t3f ProSAT]</span></td></tr>
[[3t3f]] is a 3 chain structure of [[DNA polymerase]] with sequence from [http://en.wikipedia.org/wiki/Thermus_aquaticus Thermus aquaticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3T3F OCA].  
</table>
== Function ==
[https://www.uniprot.org/uniprot/DPO1_THEAQ DPO1_THEAQ]


==See Also==
==See Also==
*[[DNA polymerase|DNA polymerase]]
*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:022318723</ref><references group="xtra"/>
[[Category: Large Structures]]
[[Category: DNA-directed DNA polymerase]]
[[Category: Thermus aquaticus]]
[[Category: Thermus aquaticus]]
[[Category: Diederichs, K.]]
[[Category: Diederichs K]]
[[Category: Marx, A.]]
[[Category: Marx A]]
[[Category: Obeid, S.]]
[[Category: Obeid S]]
[[Category: A-rule]]
[[Category: Abasic site]]
[[Category: Base analogue]]
[[Category: Base stacking]]
[[Category: Dna polymerase]]
[[Category: Dnitp]]
[[Category: Nitroindol triphosphate]]
[[Category: Transferase-dna complex]]
[[Category: Translesion synthesis]]