3gj2: Difference between revisions

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[[Image:3gj2.png|left|200px]]


{{STRUCTURE_3gj2| PDB=3gj2 | SCENE= }}  
==Photoactivated state of PA-GFP==
<StructureSection load='3gj2' size='340' side='right'caption='[[3gj2]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[3gj2]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GJ2 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GJ2 FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CRO:{2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4-HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC+ACID'>CRO</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gj2 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gj2 OCA], [https://pdbe.org/3gj2 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gj2 RCSB], [https://www.ebi.ac.uk/pdbsum/3gj2 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gj2 ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/GFP_AEQVI GFP_AEQVI] Energy-transfer acceptor. Its role is to transduce the blue chemiluminescence of the protein aequorin into green fluorescent light by energy transfer. Fluoresces in vivo upon receiving energy from the Ca(2+)-activated photoprotein aequorin.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gj/3gj2_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3gj2 ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Crystal structures of the photoactivatable green fluorescent protein T203H variant (PA-GFP) have been solved in the native and photoactivated states, which under 488 nm illumination are dark and brightly fluorescent, respectively. We demonstrate that photoactivation of PA-GFP is the result of a UV-induced decarboxylation of the Glu222 side chain that shifts the chromophore equilibrium to the anionic form. Coupled with the T203H mutation, which stabilizes the native PA-GFP neutral chromophore, Glu222 decarboxylation yields a 100-fold contrast enhancement relative to wild-type GFP (WT). Additionally, the structures provide insights into the spectroscopic differences between WT and PA-GFP steady-state fluorescence maxima and excited-state proton transfer dynamics.


===Photoactivated state of PA-GFP===
Structure and Mechanism of the Photoactivatable Green Fluorescent Protein.,Henderson JN, Gepshtein R, Heenan JR, Kallio K, Huppert D, Remington SJ J Am Chem Soc. 2009 Mar 11. PMID:19278226<ref>PMID:19278226</ref>


{{ABSTRACT_PUBMED_19278226}}
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
</div>
==About this Structure==
<div class="pdbe-citations 3gj2" style="background-color:#fffaf0;"></div>
[[3gj2]] is a 4 chain structure of [[Alyssa Marsico/Sandbox 1]], [[Devon McCarthy/Sandbox 1]], [[Green Fluorescent Protein]], [[Sandbox104]] and [[User:Joanne Lau/Sandbox 5]] with sequence from [http://en.wikipedia.org/wiki/Aequorea_victoria Aequorea victoria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GJ2 OCA].


==See Also==
==See Also==
*[[Alyssa Marsico/Sandbox 1|Alyssa Marsico/Sandbox 1]]
*[[Green Fluorescent Protein 3D structures|Green Fluorescent Protein 3D structures]]
*[[Devon McCarthy/Sandbox 1|Devon McCarthy/Sandbox 1]]
== References ==
*[[Green Fluorescent Protein|Green Fluorescent Protein]]
<references/>
*[[Sandbox104|Sandbox104]]
__TOC__
*[[User:Joanne Lau/Sandbox 5|User:Joanne Lau/Sandbox 5]]
</StructureSection>
 
==Reference==
<ref group="xtra">PMID:019278226</ref><references group="xtra"/>
[[Category: Aequorea victoria]]
[[Category: Aequorea victoria]]
[[Category: Gepshtein, R.]]
[[Category: Large Structures]]
[[Category: Heenan, J R.]]
[[Category: Gepshtein R]]
[[Category: Henderson, J N.]]
[[Category: Heenan JR]]
[[Category: Huppert, D.]]
[[Category: Henderson JN]]
[[Category: Kallio, K.]]
[[Category: Huppert D]]
[[Category: Remington, S J.]]
[[Category: Kallio K]]
[[Category: Beta barrel]]
[[Category: Remington SJ]]
[[Category: Chromophore]]
[[Category: Luminescence]]
[[Category: Luminescent protein]]
[[Category: Photoprotein]]
Retrieved from "https://proteopedia.org/3gj2"