4g0o: Difference between revisions

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[[Image:4g0o.png|left|200px]]


{{STRUCTURE_4g0o| PDB=4g0o | SCENE= }}
==Crystal structure of Arabidopsis thaliana AGO5 MID domain==
<StructureSection load='4g0o' size='340' side='right'caption='[[4g0o]], [[Resolution|resolution]] 2.19&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[4g0o]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G0O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4G0O FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.186&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4g0o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4g0o OCA], [https://pdbe.org/4g0o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4g0o RCSB], [https://www.ebi.ac.uk/pdbsum/4g0o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4g0o ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AGO5_ARATH AGO5_ARATH] Involved in RNA-mediated post-transcriptional gene silencing (PTGS). Main component of the RNA-induced silencing complex (RISC) that binds to a short guide RNA such as a microRNA (miRNA) or small interfering RNA (siRNA). RISC uses the mature miRNA or siRNA as a guide for slicer-directed cleavage of homologous mRNAs to repress gene expression. Associates with siRNAs of various sizes, from 21-24 nucleotide in length and preferentially recruits small RNAs with a 5' terminal cytosine. Probably involved in antiviral RNA silencing. Associates with siRNAs derived from cucumber mosaic virus (CMV). Targeted by the turnip yellows virus (TuYV) protein P0 (via F-box-like domain) for probable proteasome degradation and thereby inactivating AGO5 function in RNA silencing.<ref>PMID:17869110</ref> <ref>PMID:18342361</ref> <ref>PMID:18344228</ref>


===Crystal structure of Arabidopsis thaliana AGO5 MID domain===
==See Also==
 
*[[Argonaute 3D structures|Argonaute 3D structures]]
{{ABSTRACT_PUBMED_22850669}}
== References ==
 
<references/>
==About this Structure==
__TOC__
[[4g0o]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4G0O OCA].
</StructureSection>
 
==Reference==
<ref group="xtra">PMID:022850669</ref><references group="xtra"/>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Frank, F.]]
[[Category: Large Structures]]
[[Category: Hauver, J.]]
[[Category: Frank F]]
[[Category: Nagar, B.]]
[[Category: Hauver J]]
[[Category: Sonenberg, N.]]
[[Category: Nagar B]]
[[Category: Gene regulation]]
[[Category: Sonenberg N]]
[[Category: Mid domain]]
[[Category: Small rna 5' nucleotide recognition]]
Retrieved from "https://proteopedia.org/4g0o"