Enolase multiple sequence alignment: Difference between revisions
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Eric Martz (talk | contribs) New page: Multiple Sequence Alignment (MSA) for enolase, an enzyme in glycolysis. Key: IDENTICAL(*) SIMILAR(.) different Consensus Percentage is set to 100%. <pre> 1 ENO_DROME| Drosoph... |
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This page is a supplement to [[Introduction to Evolutionary Conservation]]. The portion of the multiple sequence alignment (MSA) below with <span style="background:pink;"> a pink background </span> is enlarged on that page. | |||
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Multiple Sequence Alignment (MSA) for enolase, an enzyme in glycolysis. | Multiple Sequence Alignment (MSA) for enolase, an enzyme in glycolysis. | ||
Key: IDENTICAL(*) | Key: '''IDENTICAL'''(*) SIMILAR(.) different | ||
Consensus Percentage is set to 100%. | Consensus Percentage is set to 100%. | ||
< | ---- | ||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'> 1 ENO_DROME| | |||
Drosophila melanogaster --------mt IkaIkA<b>R</b>qIy <b>DSRGNPTVE</b>v | |||
DLtt-elglf rAav<b>PSGAST</b> 41<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens ---------s IlkIhA<b>R</b>eIf <b>DSRGNPTVE</b>v DLft-skglf | |||
rAav<b>PSGAST</b> 40<br> | |||
3 ENO_METJA| Methanococcus janaschii | |||
mlynmderfe IkdIvA<b>R</b>eVi <b>DSRGNPTVE</b>v EVitkgngyg sAiv<b>PSGAST</b> | |||
50<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli --------sk IvkIiG<b>R</b>eIi <b>DSRGNPTVE</b>a | |||
EVhleggfvg mAaa<b>PSGAST</b> 42<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis -------mpy IvdVyA<b>R</b>eVl <b>DSRGNPTVE</b>v | |||
EVytetgafg rAlv<b>PSGAST</b> 43<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae ---------a VskVyA<b>R</b>sVy | |||
<b>DSRGNPTVE</b>v ELtt-ekgvf rSiv<b>PSGAST</b> 40</span></p> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | |||
yes"> </span><span | |||
style="mso-spacerun: | |||
yes"> </span>.<span | |||
style="mso-spacerun: yes"> </span>. .* .<span style="mso-spacerun: | |||
yes"> </span>*********<span style="mso-spacerun: yes"> | |||
</span>..<span style="mso-spacerun: yes"> | |||
</span>.<span style="mso-spacerun: yes"> </span>******<br> | |||
<br> | |||
1 ENO_DROME| Drosophila melanogaster <b>G</b>vh<b>EA</b>L<b>E</b>l<b>RD</b> | |||
nD<b>K</b>anYh<b>GK</b>S <b>V</b>lk<b>AV</b>ghV<b>N</b>d tLgpelIkan ldvvd<b>Q</b>asI<b>D</b> | |||
91<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens <b>G</b>iy<b>EA</b>L<b>E</b>l<b>RD</b> nD<b>K</b>trYm<b>GK</b>G | |||
<b>V</b>sk<b>AV</b>ehI<b>N</b>k tIapalVskk lnvte<b>Q</b>ekI<b>D</b> 90<br> | |||
3 ENO_METJA| Methanococcus janaschii <b>G</b>th<b>EA</b>L<b>E</b>l<b>RD</b> | |||
kE<b>K</b>-rFg<b>GK</b>G <b>V</b>lm<b>AV</b>enV<b>N</b>s iIrpeiLg-- ydarm<b>Q</b>reI<b>D</b> | |||
97<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli <b>G</b>sr<b>EA</b>L<b>E</b>l<b>RD</b> gD<b>K</b>srFl<b>GK</b>G | |||
<b>V</b>tk<b>AV</b>aaV<b>N</b>g pIaqalIg-- kdakd<b>Q</b>agI<b>D</b> 90<br> | |||
5 ENO_BACSU| Bacillus | |||
subtilis <b>G</b>ey<b>EA</b>V<b>E</b>l<b>RD</b> gD<b>K</b>drYl<b>GK</b>G <b>V</b>lt<b>AV</b>nnV<b>N</b>e | |||
iIapelLg-- fdvte<b>Q</b>naI<b>D</b> 91<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae <b>G</b>vh<b>EA</b>L<b>E</b>m<b>RD</b> | |||
gD<b>K</b>skWm<b>GK</b>G <b>V</b>lh<b>AV</b>knV<b>N</b>d vIapafVkan idvsd<b>Q</b>kaV<b>D</b> | |||
90</span></p> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | |||
yes"> | |||
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style="mso-spacerun: yes"> </span>.<span style="mso-spacerun: | |||
yes"> </span>*<span | |||
style="mso-spacerun: yes"> </span>.*<br> | |||
<br> | |||
1 ENO_DROME| Drosophila melanogaster nfm<b>I</b>kl<b>DGT</b>e | |||
<b>NK</b>SKf<b>GANAI</b> <b>L</b>G<b>VS</b>l<b>A</b>vaK<b>A</b> G<b>A</b>akkgv<b>PLY</b> | |||
khIAdlagn- 140<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens klm<b>I</b>em<b>DGT</b>e <b>NK</b>SKf<b>GANAI</b> <b>L</b>G<b>VS</b>l<b>A</b>vcK<b>A</b> | |||
G<b>A</b>vekgv<b>PLY</b> rhIAdlagn- 139<br> | |||
3 ENO_METJA| Methanococcus janaschii tim<b>I</b>el<b>DGT</b>p | |||
<b>NK</b>SRl<b>GANAI</b> <b>L</b>A<b>VS</b>l<b>A</b>vaK<b>A</b> A<b>A</b>ataki<b>PLY</b> | |||
kyLGgfn--- 144<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli kim<b>I</b>dl<b>DGT</b>e <b>NK</b>SKf<b>GANAI</b> <b>L</b>A<b>VS</b>l<b>A</b>naK<b>A</b> | |||
A<b>A</b>aakgm<b>PLY</b> ehIAelngt- 139<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis qll<b>I</b>el<b>DGT</b>e <b>NK</b>GKl<b>GANAI</b> <b>L</b>G<b>VS</b>m<b>A</b>caR<b>A</b> | |||
A<b>A</b>dflqi<b>PLY</b> qyLGgfn--- 138<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae dfl<b>I</b>sl<b>DGT</b>a | |||
<b>NK</b>SKl<b>GANAI</b> <b>L</b>G<b>VS</b>l<b>A</b>asR<b>A</b> A<b>A</b>aeknv<b>PLY</b> | |||
khLAdlsksk 140</span></p> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | |||
yes"> | |||
</span>*<span style="mso-spacerun: yes"> </span>***<span | |||
style="mso-spacerun: yes"> </span>**.. ***** *.** *<span | |||
style="mso-spacerun: yes"> </span>.* .*<span style="mso-spacerun: | |||
yes"> </span>***<span style="mso-spacerun: | |||
yes"> </span>.<br> | |||
<br> | |||
1 ENO_DROME| Drosophila melanogaster -keiil<b>PVP</b>a | |||
f<b>N</b>VI<b>NGG</b>s<b>HA</b> gnkLam<b>QEFM</b> <b>I</b>l<b>P</b>t<b>GA</b>tsft | |||
<b>EA</b>mKm<b>G</b>SeVY 189<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens -sevil<b>PVP</b>a f<b>N</b>VI<b>NGG</b>s<b>HA</b> gnkLam<b>QEFM</b> | |||
<b>I</b>l<b>P</b>v<b>GA</b>anfr <b>EA</b>mRi<b>G</b>AeVY 188<br> | |||
3 ENO_METJA| Methanococcus janaschii --syvm<b>PVP</b>m | |||
m<b>N</b>VI<b>NGG</b>k<b>HA</b> gndLdl<b>QEFM</b> <b>I</b>m<b>P</b>v<b>GA</b>tsis | |||
<b>EA</b>vRm<b>G</b>SeVY 192<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli pgkysm<b>PVP</b>m m<b>N</b>II<b>NGG</b>e<b>HA</b> dnnVdi<b>QEFM</b> | |||
<b>I</b>q<b>P</b>v<b>GA</b>ktvk <b>EA</b>iRm<b>G</b>SeVF 189<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis --sktl<b>PVP</b>m m<b>N</b>IV<b>NGG</b>e<b>HA</b> | |||
dnnVdi<b>QEFM</b> <b>I</b>m<b>P</b>v<b>GA</b>pnfr <b>EA</b>lRm<b>G</b>AqIF 186<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae tspyvl<b>PVP</b>f | |||
l<b>N</b>VL<b>NGG</b>s<b>HA</b> ggaLal<b>QEFM</b> <b>I</b>a<b>P</b>t<b>GA</b>ktfa | |||
<b>EA</b>lRi<b>G</b>SeVY 190</span></p> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | |||
yes"> | |||
</span>***<span style="mso-spacerun: yes"> </span>*..*** **<span | |||
style="mso-spacerun: yes"> </span>.<span style="mso-spacerun: | |||
yes"> </span>**** * * **<span style="mso-spacerun: | |||
yes"> </span>** . *. ..</span></p> | |||
<span style='font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family: | |||
"Times New Roman";mso-bidi-font-family:"Courier New";mso-ansi-language:EN-US; | |||
mso-fareast-language:EN-US'><br clear=ALL style='page-break-before:always'> | |||
</span> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'> 1 ENO_DROME| | |||
Drosophila melanogaster <b>H</b>h<b>L</b>knVikaK fgldata<b>VGD</b> <b>EGG</b>f<b>AP</b>nIqs | |||
nk<b>E</b>A<b>L</b>nlIsd AIak<b>AG</b>yt-- 237<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens <b>H</b>n<b>L</b>knVikeK ygkdatn<b>VGD</b> <b>EGG</b>f<b>AP</b>nIle | |||
nk<b>E</b>G<b>L</b>elLkt AIgk<b>AG</b>yt-- 236<br> | |||
3 ENO_METJA| Methanococcus janaschii <b>H</b>v<b>L</b>knVileK | |||
ygknavn<b>VGD</b> <b>EGG</b>f<b>AP</b>pLkt sr<b>E</b>A<b>L</b>dlLte SVkk<b>AG</b>ye-- | |||
240<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli <b>H</b>h<b>L</b>akVlkaK g--mnta<b>VGD</b> <b>EGG</b>y<b>AP</b>nLgs | |||
na<b>E</b>A<b>L</b>avIae AVka<b>AG</b>yelg 237<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis <b>H</b>s<b>L</b>ksVlsaK g--lnta<b>VGD</b> <b>EGG</b>f<b>AP</b>nLgs | |||
ne<b>E</b>A<b>L</b>qtIve AIek<b>AG</b>fkpg 234<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae <b>H</b>n<b>L</b>ksLtkkR | |||
ygasagn<b>VGD</b> <b>EGG</b>v<b>AP</b>nIqt ae<b>E</b>A<b>L</b>dlIvd AIka<b>AG</b>---- 238</span></p> | |||
<p class=MsoNormal><span | |||
style='font-size:10.0pt;font-family:"Courier New";mso-bidi-font-family:"Courier New"'><span | |||
style="mso-spacerun: | |||
yes"> | |||
</span><span style="mso-spacerun: | |||
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yes"> </span>.<span style="mso-spacerun: | |||
yes"> </span>*** *** ** .<span | |||
style="mso-spacerun: yes"> </span>*.*<span | |||
style="mso-spacerun: yes"> </span>.<span style="mso-spacerun: | |||
yes"> </span>..<span style="mso-spacerun: yes"> </span>** <br> | |||
<span style="mso-spacerun: | |||
yes"> | |||
</span> | |||
</ | |||
<br> | |||
1 ENO_DROME| Drosophila melanogaster <span style="background:pink;"> gkIeiGm<b>D</b>v<b>A</b> | |||
A<b>SEF</b>Yk--d<b>G</b></span> q<b>Y</b>dLdfknek sdksqwlpad klanlykefi 285<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens <span style="background:pink;"> dkVviGm<b>D</b>v<b>A</b> A<b>SEF</b>Fr--s<b>G</b></span> k<b>Y</b>dLdfksp- | |||
ddpsryispd qladlyksfi 283<br> | |||
3 ENO_METJA| Methanococcus janaschii <span style="background:pink;"> deVvfAl<b>D</b>a<b>A</b> | |||
A<b>SEF</b>Yk--d<b>G</b></span> y<b>Y</b>yVegkk-- ------ltre elldyykalv 280<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli <span style="background:pink;"> kdItlAm<b>D</b>c<b>A</b> A<b>SEF</b>Yk--d<b>G</b></span> k<b>Y</b>vLagegn- | |||
----kaftse efthfleelt 280<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis <span style="background:pink;"> eeVklAm<b>D</b>a<b>A</b> S<b>SEF</b>Ynked<b>G</b></span> k<b>Y</b>hLsgeg-- | |||
----vvktsa emvdwyeelv 278<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae <span style="background:pink;"> gkVkiGl<b>D</b>c<b>A</b> | |||
S<b>SEF</b>Fk--d<b>G</b></span> k<b>Y</b>dLdfknpn sdkskwltgp qladlyhslm 286</span></p> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | |||
yes"> | |||
</span><span style="mso-spacerun: | |||
yes"> </span>.<span | |||
style="mso-spacerun: yes"> </span>. * * .***.<span style="mso-spacerun: | |||
yes"> </span>*<span style="mso-spacerun: yes"> </span>* | |||
.<span style="mso-spacerun: | |||
yes"> | |||
</span><br> | |||
<span style="mso-spacerun: | |||
yes"> | |||
</span><br> | |||
1 ENO_DROME| Drosophila melanogaster kdF<b>P</b>IV<b>SIED</b> | |||
pfdqdhWeAw snltgctd-- I<b>Q</b>I<b>V</b>G<b>DDL</b>t<b>V</b> <b>TN</b>pkrIatAV | |||
333<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens kdY<b>P</b>VV<b>SIED</b> pfdqddWgAw qkftasag-- I<b>Q</b>V<b>V</b>G<b>DDL</b>t<b>V</b> | |||
<b>TN</b>pkrIakAV 331<br> | |||
3 ENO_METJA| Methanococcus janaschii deY<b>P</b>IV<b>SIED</b> | |||
pfheedFeGf amitkeld-- I<b>Q</b>I<b>V</b>G<b>DDL</b>f<b>V</b> <b>TN</b>verLrkGI | |||
328<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli kqY<b>P</b>IV<b>SIED</b> gldesdWdGf ayqtkvlgdk I<b>Q</b>L<b>V</b>G<b>DDL</b>f<b>V</b> | |||
<b>TN</b>tkiLkeGI 330<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis skY<b>P</b>II<b>SIED</b> gldendWeGh kllterlgkk V<b>Q</b>L<b>V</b>G<b>DDL</b>f<b>V</b> | |||
<b>TN</b>tkkLseGI 328<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae krY<b>P</b>IV<b>SIED</b> | |||
pfaeddWeAw shffktag-- I<b>Q</b>I<b>V</b>A<b>DDL</b>t<b>V</b> <b>TN</b>pkrIatAI | |||
334</span></p> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | |||
yes"> | |||
</span><span style="mso-spacerun: | |||
yes"> </span>.*..****<span | |||
style="mso-spacerun: yes"> </span>. .<span | |||
style="mso-spacerun: | |||
yes"> | |||
</span>.*.*.*** * **<span style="mso-spacerun: yes"> </span>.<span | |||
style="mso-spacerun: yes"> </span>..<br> | |||
<br> | |||
1 ENO_DROME| Drosophila melanogaster | |||
ekkacncL<b>L</b>L <b>K</b>v<b>NQIG</b>tVt<b>E</b> sia<b>A</b>hllAkk n<b>G</b>WgtmV<b>SHR</b> | |||
<b>SGETED</b>sf<b>I</b>G 383<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens nekscncL<b>L</b>L <b>K</b>v<b>NQIG</b>sVt<b>E</b> slq<b>A</b>cklAqa | |||
n<b>G</b>WgvmV<b>SHR</b> <b>SGETED</b>tf<b>I</b>A 381<br> | |||
3 ENO_METJA| Methanococcus janaschii | |||
emkaanaL<b>L</b>L <b>K</b>v<b>NQIG</b>tLs<b>E</b> avd<b>A</b>aqlAfr n<b>G</b>YgvvV<b>SHR</b> | |||
<b>SGETED</b>tt<b>I</b>A 378<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli ekgiansI<b>L</b>I <b>K</b>f<b>NQIG</b>sLt<b>E</b> tla<b>A</b>ikmAkd | |||
a<b>G</b>YtavI<b>SHR</b> <b>SGETED</b>at<b>I</b>A 380<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis kngvgnsI<b>L</b>I <b>K</b>v<b>NQIG</b>tLt<b>E</b> tfd<b>A</b>iemAkr | |||
a<b>G</b>YtavI<b>SHR</b> <b>SGETED</b>st<b>I</b>A 378<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae ekkaadaL<b>L</b>L | |||
<b>K</b>v<b>NQIG</b>tLs<b>E</b> sik<b>A</b>aqdSfa a<b>G</b>WgvmV<b>SHR</b> <b>SGETED</b>tf<b>I</b>A | |||
384</span></p> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | |||
yes"> | |||
</span>.*. . **** . *<span style="mso-spacerun: yes"> | |||
</span>*<span style="mso-spacerun: yes"> </span>.<span | |||
style="mso-spacerun: yes"> </span>*.<span | |||
style="mso-spacerun: yes"> </span>.*** ******<span | |||
style="mso-spacerun: yes"> </span>*.<br> | |||
<br> | |||
1 ENO_DROME| Drosophila melanogaster <b>D</b>Lv<b>V</b>Glst<b>GQ</b> | |||
<b>IKTG</b>Apc<b>R</b>sE <b>R</b>l<b>AK</b>y<b>NQ</b>IL<b>R</b> <b>IE</b>eeIGagvk | |||
Fa<b>G</b>ksfgkpq 433<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens <b>D</b>Lv<b>V</b>Glct<b>GQ</b> <b>IKTG</b>Apc<b>R</b>sE <b>R</b>l<b>AK</b>y<b>NQ</b>LL<b>R</b> | |||
<b>IE</b>eeLGskak Fa<b>G</b>rnfrnpl 431<br> | |||
3 ENO_METJA| Methanococcus janaschii <b>D</b>Ls<b>V</b>Alns<b>GQ</b> | |||
<b>IKTG</b>Apa<b>R</b>gE <b>R</b>t<b>AK</b>y<b>NQ</b>LI<b>R</b> <b>IE</b>qeLG-lsk | |||
Ya<b>G</b>rnfrcpf 427<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli <b>D</b>La<b>V</b>Gtaa<b>GQ</b> <b>IKTG</b>Sms<b>R</b>sD | |||
<b>R</b>v<b>AK</b>y<b>NQ</b>LI<b>R</b> <b>IE</b>eaLGekap Yn<b>G</b>rkeikgq 430<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis <b>D</b>Ia<b>V</b>Atna<b>GQ</b> <b>IKTG</b>Aps<b>R</b>tD | |||
<b>R</b>v<b>AK</b>y<b>NQ</b>LL<b>R</b> <b>IE</b>dqLAetaq Yh<b>G</b>insfynl 428<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae <b>D</b>Lv<b>V</b>Glrt<b>GQ</b> | |||
<b>IKTG</b>Apa<b>R</b>sE <b>R</b>l<b>AK</b>l<b>NQ</b>LL<b>R</b> <b>IE</b>eeLGdnav | |||
Fa<b>G</b>enfhhgd 434</span></p> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'><span style="mso-spacerun: | |||
yes"> | |||
</span>*. *.<span style="mso-spacerun: yes"> </span>** ****.<span | |||
style="mso-spacerun: yes"> </span>* . * ** **..* **<span | |||
style="mso-spacerun: yes"> </span>..<span style="mso-spacerun: | |||
yes"> </span>. *</span></p> | |||
<span style='font-size:10.0pt;font-family:"Courier New";mso-fareast-font-family: | |||
"Times New Roman";mso-bidi-font-family:"Courier New";mso-ansi-language:EN-US; | |||
mso-fareast-language:EN-US'><br clear=ALL style='page-break-before:always'> | |||
</span> | |||
<p class=MsoNormal><span style='font-size:10.0pt;font-family:"Courier New"; | |||
mso-bidi-font-family:"Courier New"'> 1 ENO_DROME| | |||
Drosophila melanogaster -- 433<br> | |||
2 ENOA_HUMAN| | |||
Homo sapiens ak 433<br> | |||
3 ENO_METJA| Methanococcus janaschii -- 427<br> | |||
4 ENO_ECOLI| | |||
Escherichia coli a- 431<br> | |||
5 ENO_BACSU| | |||
Bacillus subtilis nk 430<br> | |||
6 4ENL Yeast| Saccharomyces cerevisiae kl 436<br> | |||
</span></p> | |||
---- | |||
Summary of categories applied to a total of 436 residues in the PDB file sequence for a consensus level setting of 100%: | Summary of categories applied to a total of 436 residues in the PDB file sequence for a consensus level setting of 100%: | ||
33% (142) IDENTICAL(*) 16% (68) SIMILAR(.) 52% (226) different | 33% (142) IDENTICAL(*) 16% (68) SIMILAR(.) 52% (226) different | ||
Definitions of SIMILAR groups of amino acids: | |||
ILV | Definitions of SIMILAR groups of amino acids:<pre> | ||
FWY | ILV Ile Leu Val hydrophobic, aliphatic / medium-sized side-chain | ||
KRH | FWY Phe Trp Tyr hydrophobic, aromatic / large side-chain (Tyr polar) | ||
DE | KRH Lys Arg His + charge | ||
GAS | DE Asp Glu - charge | ||
P | GAS Gly Ala Ser small | ||
C | P Pro helix breaking | ||
C Cys disulfide-forming | |||
TNQM Thr Asn Gln Met polar (except Met) | TNQM Thr Asn Gln Met polar (except Met) | ||
</pre> | |||