1kkx: Difference between revisions

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[[Image:1kkx.jpg|left|200px]]<br /><applet load="1kkx" size="350" color="white" frame="true" align="right" spinBox="true"
caption="1kkx" />
'''Solution structure of the DNA-binding domain of ADR6'''<br />


==About this Structure==
==Solution structure of the DNA-binding domain of ADR6==
1KKX is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KKX OCA].  
<StructureSection load='1kkx' size='340' side='right'caption='[[1kkx]]' scene=''>
 
== Structural highlights ==
==Reference==
<table><tr><td colspan='2'>[[1kkx]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KKX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KKX FirstGlance]. <br>
1H, 13C and 15N resonance assignments and secondary structure of ADR6 DNA-binding domain., Tu X, Wu J, Xu Y, Shi Y, J Biomol NMR. 2001 Oct;21(2):187-8. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=11727987 11727987]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kkx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kkx OCA], [https://pdbe.org/1kkx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kkx RCSB], [https://www.ebi.ac.uk/pdbsum/1kkx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kkx ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/SWI1_YEAST SWI1_YEAST] Involved in transcriptional activation. Component of the SWI/SNF complex, an ATP-dependent chromatin remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/kk/1kkx_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kkx ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Saccharomyces cerevisiae]]
[[Category: Single protein]]
[[Category: Shi Y]]
[[Category: Shi, Y.]]
[[Category: Tu X]]
[[Category: Tu, X.]]
[[Category: Wu J]]
[[Category: Wu, J.]]
[[Category: Xu Y]]
[[Category: Xu, Y.]]
[[Category: adr6]]
[[Category: arid]]
[[Category: dna-binding domain]]
 
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