Sandbox 37: Difference between revisions

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{{Template:Oberholser_Sandbox_Reservation}}
{{Template:Oberholser_Sandbox_Reservation}}
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<Structure load='1AKE' size='500' frame='true' align='right' caption='Adenylate Kinase' scene='Matt's Beautiful Protein' /> The <scene name='Sandbox_37/Matt_adenylate_kinase_37/1'>Secondary Structure</scene> of adenylate kinase shows alpha helices (cyan) and beta sheets (green) surrounding the non-hydrolysable substrate analogue (orange).
<Structure load='1AKE' size='500' frame='true' align='right' caption='Adenylate Kinase' scene='Matt's Beautiful Protein' />  
The <scene name='Sandbox_37/Matt_helix_beta_colored/1'>Adenylate Kinase</scene> protein is shown here with alpha helices (green) and beta sheets (blue) highlighted appropriately.


The <scene name='Sandbox_37/Matt_helix_hbonbds/1'>Hydrogen Bonds</scene> of chain A of the protein are highlighted in orange here.
The <scene name='Sandbox_37/Matt_adenylate_kinase_37/1'>Adenylate Kinase</scene> protein is shown here with alpha helices (cyan) and beta sheets (green) surrounding the non-hydrolysable substrate analogue (orange).


The <scene name='Sandbox_37/Matt_hydrophobic/1'>Hydrophobic Interactions</scene> are shown here in purple.
The <scene name='Sandbox_37/Matt_helix_beta_colored/1'>Secondary Structure</scene> of the protein is shown here with alpha helices (green) and beta sheets (blue) highlighted appropriately.


The <scene name='Sandbox_37/Matt_hydrophilic/1'>Hydrophilic Interactions</scene> are shown here in black.
The <scene name='Sandbox_37/Matt_hydrogen_bonds_good/1'>Hydrogen Bonds</scene> of chain A of the protein are highlighted in orange here.
 
The <scene name='Sandbox_37/Matt_hydrophobic_good/1'>Hydrophobic Interactions</scene> are shown here in red.
 
The <scene name='Sandbox_37/Matt_hydrophilic_good/1'>Hydrophilic Interactions</scene> are shown here in black.


The <scene name='Sandbox_37/Matt_solvent/1'>Solvent</scene> , which is water, is shown here in red. Water's primary location is on the outer parts of the protein, or the hydrophilic regions.
The <scene name='Sandbox_37/Matt_solvent/1'>Solvent</scene> , which is water, is shown here in red. Water's primary location is on the outer parts of the protein, or the hydrophilic regions.


The side chains that interact with the <scene name='Sandbox_37/Matt_ligand/1'>ligand</scene> are shown here in crimson. The interactions occur with the hydrophobic side chains. The rest of the protein is faded blue.
The side chains that interact with the <scene name='Sandbox_37/Matt_ligand/1'>ligand</scene> are shown here in crimson. The interactions occur with the hydrophobic side chains. The rest of the protein is faded blue.
Copy and paste the following line where you want the scene link to appear (scroll down if needed) and edit the TextToBeDisplayed:


The <scene name='Sandbox_37/Matt_catalytic_residues/1'>catalytic residues</scene> of this protein are shown here in lime green.
The <scene name='Sandbox_37/Matt_catalytic_residues/1'>catalytic residues</scene> of this protein are shown here in lime green.
Retrieved from "https://proteopedia.org/Sandbox_37"