3cdi: Difference between revisions

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[[Image:3cdi.png|left|200px]]


{{STRUCTURE_3cdi|  PDB=3cdi  |  SCENE=  }}
==Crystal structure of E. coli PNPase==
 
<StructureSection load='3cdi' size='340' side='right'caption='[[3cdi]], [[Resolution|resolution]] 2.60&Aring;' scene=''>
===Crystal structure of E. coli PNPase===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3cdi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3CDI FirstGlance]. <br>
{{ABSTRACT_PUBMED_18812438}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.6&#8491;</td></tr>
 
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3cdi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3cdi OCA], [https://pdbe.org/3cdi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3cdi RCSB], [https://www.ebi.ac.uk/pdbsum/3cdi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3cdi ProSAT]</span></td></tr>
==About this Structure==
</table>
[[3cdi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3CDI OCA].  
== Function ==
[https://www.uniprot.org/uniprot/PNP_ECOLI PNP_ECOLI] Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3'- to 5'-direction.[HAMAP-Rule:MF_01595]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/cd/3cdi_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3cdi ConSurf].
<div style="clear:both"></div>


==See Also==
==See Also==
*[[Ribonuclease|Ribonuclease]]
*[[Ribonuclease 3D structures|Ribonuclease 3D structures]]
 
__TOC__
==Reference==
</StructureSection>
<ref group="xtra">PMID:018812438</ref><references group="xtra"/>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
[[Category: Polyribonucleotide nucleotidyltransferase]]
[[Category: Large Structures]]
[[Category: Chak, K F.]]
[[Category: Chak KF]]
[[Category: Lin-Chao, S.]]
[[Category: Lin-Chao S]]
[[Category: Shi, Z.]]
[[Category: Shi Z]]
[[Category: Yang, W Z.]]
[[Category: Yang WZ]]
[[Category: Yuan, H S.]]
[[Category: Yuan HS]]
[[Category: Kinase]]
[[Category: Mrna turnover]]
[[Category: Polynucleotide phosphorylase]]
[[Category: Rna degradation]]
[[Category: Rnase]]
[[Category: Transferase]]
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