2d3o: Difference between revisions
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==Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans== | |||
<StructureSection load='2d3o' size='340' side='right'caption='[[2d3o]], [[Resolution|resolution]] 3.35Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2d3o]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Deinococcus_radiodurans Deinococcus radiodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D3O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D3O FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.35Å</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d3o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d3o OCA], [https://pdbe.org/2d3o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d3o RCSB], [https://www.ebi.ac.uk/pdbsum/2d3o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d3o ProSAT]</span></td></tr> | |||
== | </table> | ||
[[2d3o]] is a | == Function == | ||
[https://www.uniprot.org/uniprot/RL23_DEIRA RL23_DEIRA] One of the early assembly protein (By similarity) it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. Forms the main docking site for trigger factor binding to the ribosome (PubMed:16091460 and PubMed:16271892).[HAMAP-Rule:MF_01369] | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d3/2d3o_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d3o ConSurf]. | |||
<div style="clear:both"></div> | |||
==See Also== | ==See Also== | ||
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*[[Ribosomal protein L24|Ribosomal protein L24]] | *[[Ribosomal protein L24|Ribosomal protein L24]] | ||
*[[Ribosomal protein L29|Ribosomal protein L29]] | *[[Ribosomal protein L29|Ribosomal protein L29]] | ||
*[[Ribosome|Ribosome]] | *[[Ribosome 3D structures|Ribosome 3D structures]] | ||
__TOC__ | |||
</StructureSection> | |||
[[Category: Deinococcus radiodurans]] | [[Category: Deinococcus radiodurans]] | ||
[[Category: Albrecht | [[Category: Large Structures]] | ||
[[Category: Buerger | [[Category: Albrecht R]] | ||
[[Category: Fucini | [[Category: Buerger J]] | ||
[[Category: Hansen | [[Category: Fucini P]] | ||
[[Category: Harms | [[Category: Hansen HA]] | ||
[[Category: McInnes | [[Category: Harms JM]] | ||
[[Category: Schluenzen | [[Category: McInnes SJ]] | ||
[[Category: Tian | [[Category: Schluenzen F]] | ||
[[Category: Wilbanks | [[Category: Tian P]] | ||
[[Category: Wilson | [[Category: Wilbanks SM]] | ||
[[Category: Wilson DN]] | |||
Latest revision as of 13:46, 13 March 2024
Structure of Ribosome Binding Domain of the Trigger Factor on the 50S ribosomal subunit from D. radiodurans
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