|
|
| (27 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| {{STRUCTURE_3e9l| PDB=3e9l | SIZE=400| SCENE= |right|CAPTION=Human pre-mRNA-splicing factor 8 endonuclease domain complex with Na+ (purple) and Cl- (green) ions, [[3e9l]] }}
| | <StructureSection load='' size='350' side='right' caption='Yeast pre-mRNA-splicing factor 8 (green) complex with AAR2 (cyan) (PDB entry [[3zef]])' scene='46/462200/Cv/1'> |
| | __TOC__ |
| | == Function == |
| | '''Pre-mRNA-splicing factors (Prp)''' are the proteins which associate with mRNA at its various splicing sites to produce alternative splicing<ref>PMID:10394358</ref>. |
|
| |
|
| '''Pre-mRNA-splicing factors (Prp)''' are the proteins which associate with mRNA at its various splicing sites to produce alternative splicing. For details on pre-mRNA-splicing factors and Prp24 see [[Prp24]]; see detailed [[Prp19]]. | | *'''Prp3b''' is part of the U2 small nuclear ribonucleoproteins complex (U2 snRNP)<br /> |
| | *'''Prp8''' functions as a scaffold which mediates the ordered assembly of spliceosomal proteins and snRNAs. For details see [[Prp8]]<br /> |
| | *'''Prp18''' and '''Bud31''' are essential for the catalytic step in pre-mRNA splicing process.<br /> |
| | *'''snRNA-associated-splicing factor 24''' binds preferentially to the U4/U6 hybrid snRNAs. For details see [[Prp24]]<br /> |
| | *For '''Prp19''' see [[Prp19]]<br /> |
| | *For '''Prp20''' see [[Srp20-Human Alternative Splicing Factor]]<br /> |
| | *'''Prp31''' functions in forming the U4/U5-U6 tri-snRNP.<br /> |
| | *For '''Prp40''' see [[Prp40]].<br /> |
| | *'''Prpcwc2''' is a yeast splicing factor which plays a role in the generation of a functional splicing center '''Prp RBM22''' is the human homolog of Prpcwc2.<br /> |
| | *'''Prpcwc26''' or '''Bud13''' belongs to the pre-mRNA retention and splicing complex RES.<br /> |
|
| |
|
| {{TOC limit|limit=2}}
| | == Disease == |
| | Mutations in Prp8 and Prp31 cause retinitis pigmentosa<ref>PMID:11468273</ref>. |
| | |
| | == Structural highlights == |
| | <scene name='46/462200/Cv/3'>Prp8 is a multi-domain protein containing an RNA-binding domain and a Jab1/MPN domain</scene>. |
|
| |
|
| == 3D Structures of pre-mRNA splicing factors == | | == 3D Structures of pre-mRNA splicing factors == |
| | [[Pre-mRNA splicing factors 3D structures]] |
|
| |
|
| ''Update June 2012''
| | </StructureSection> |
| | |
| ===Pre-mRNA-splicing factor 2===
| |
| | |
| [[3beg]] – hPrp residues 105-219 + Ser/Thr-protein kinase – human<BR />
| |
| [[2o3d]] – hPrp P33 subunit
| |
| | |
| ===Pre-mRNA-splicing factor 3===
| |
| | |
| [[1x4q]] – hPrp PWI domain - NMR<BR />
| |
| | |
| ===Pre-mRNA-splicing factor 3B===
| |
| | |
| [[3lqv]], [[2f9d]], [[2f9j]] – hPrp residues 377-415 + pre-mRNA branch site protein 14<BR />
| |
| [[2fho]] - hPrp residues 379-424 + spliceosomal protein P14 - NMR<BR />
| |
| [[2do5]] – hPrp subunit 2 – NMR<BR />
| |
| [[1x5t]] - hPrp subunit 4 – NMR<BR />
| |
| [[1x5u]] - hPrp subunit 4 RNA-binding domain – NMR<BR />
| |
| | |
| ===Pre-mRNA-splicing factor 8===
| |
| | |
| [[3sbt]] – yPrp RNAseH like domain + A1 cistron-splicing factor AAR2 – yeast<BR />
| |
| [[3e66]] – yPrp β-finger domain<BR />
| |
| [[3e9o]], [[3e9p]] - yPrp RNA-binding domain<BR />
| |
| [[2p87]], [[2og4]], [[3sbg]] - yPrp C terminal<BR />
| |
| [[3lru]] – hPrp residues 1831-1990<BR />
| |
| [[3e9l]] – hPrp endonuclease domain<BR />
| |
| [[3enb]] - hPrp core domain IV<BR />
| |
| [[2p8r]] – Prp C terminal (mutant) – ''Caenorhabditis elegans''
| |
| | |
| ===Pre-mRNA-splicing factor 9===
| |
| | |
| [[4dgw]] – yPrp + Prp 21 + Prp 11
| |
| | |
| ===Pre-mRNA-splicing factor 18===
| |
| | |
| [[2dk4]] – hPrp splicing factor motif domain - NMR<BR />
| |
| | |
| ===Pre-mRNA-splicing factor 19===
| |
| | |
| [[3lrv]] – yPrp WD40 domain<BR />
| |
| [[2bay]] – yPrp U-box<BR />
| |
| [[1n87]] - yPrp U-box - NMR<BR />
| |
| | |
| ===Pre-mRNA-splicing factor 20===
| |
| | |
| [[2i2y]] – Prp RNA-binding domain + RNA – ''Streptococcus'' – NMR<BR />
| |
| [[2i38]] - hPrp RNA-binding domain (mutant) – NMR<BR />
| |
| | |
| ===snRNA-associated-splicing factor 24===
| |
| | |
| [[2l9w]] – yPrp C terminal – NMR<BR />
| |
| [[2kh9]] – yPrp residues 115-197 + RNA – NMR<BR />
| |
| [[2go9]] – yPrp RNA-binding domains – NMR<BR />
| |
| [[2ghp]] - yPrp RNA-binding domains
| |
| | |
| ===Pre-mRNA-splicing factor 43P===
| |
| | |
| [[2xau]], [[3kx2 – yPrp + ADP
| |
| | |
| ===Pre-mRNA-splicing factor RBM22===
| |
| | |
| [[2ytc]] – yPrp RNA-binding domain - NMR<BR />
| |
| | |
| | |
| ===Pre-mRNA-splicing factor RDS3===
| |
| | |
| [[2k0a]] – yPrp - NMR<BR />
| |
| | |
| ===Pre-mRNA-splicing factor URN1===
| |
| | |
| [[2juc]] – yPrp FF domain - NMR<BR />
| |
| | |
| | |
|
| |
|
| | == References == |
| | <references/> |
|
| |
|
|
| |
|
| [[Category:Topic Page]] | | [[Category:Topic Page]] |
