1kuj: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1kuj.png|left|200px]]


{{STRUCTURE_1kuj| PDB=1kuj | SCENE= }}
==Crystal structure of Jacalin complexed with 1-O-methyl-alpha-D-mannose==
<StructureSection load='1kuj' size='340' side='right'caption='[[1kuj]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1kuj]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Artocarpus_integer Artocarpus integer]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KUJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1KUJ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MMA:O1-METHYL-MANNOSE'>MMA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1kuj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1kuj OCA], [https://pdbe.org/1kuj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1kuj RCSB], [https://www.ebi.ac.uk/pdbsum/1kuj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1kuj ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/LECA_ARTIN LECA_ARTIN] D-galactose-specific lectin, binds the T-antigen structure Gal-beta1,3-GalNAc (Thomsen-Friedenreich-antigen-specific lectin). Potent and selective stimulant of distinct T- and B-cell functions. Shows a unique ability to specifically recognize IgA-1 from human serum.
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ku/1kuj_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1kuj ConSurf].
<div style="clear:both"></div>
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
Evidence is presented that the specificity of jacalin, the seed lectin from jack fruit (Artocarpus integrifolia), is not directed exclusively against the T-antigen disaccharide Galbeta1,3GalNAc, lactose and galactose, but also against mannose and oligomannosides. Biochemical analyses based on surface-plasmon-resonance measurements, combined with the X-ray-crystallographic determination of the structure of a jacalin-alpha-methyl-mannose complex at 2 A resolution, demonstrated clearly that jacalin is fully capable of binding mannose. Besides mannose, jacalin also interacts readily with glucose, N-acetylneuraminic acid and N-acetylmuramic acid. Structural analyses demonstrated that the relatively large size of the carbohydrate-binding site enables jacalin to accommodate monosaccharides with different hydroxyl conformations and provided unambiguous evidence that the beta-prism structure of jacalin is a sufficiently flexible structural scaffold to confer different carbohydrate-binding specificities to a single lectin.


===Crystal structure of Jacalin complexed with 1-O-methyl-alpha-D-mannose===
Structural basis for the unusual carbohydrate-binding specificity of jacalin towards galactose and mannose.,Bourne Y, Astoul CH, Zamboni V, Peumans WJ, Menu-Bouaouiche L, Van Damme EJ, Barre A, Rouge P Biochem J. 2002 May 15;364(Pt 1):173-80. PMID:11988090<ref>PMID:11988090</ref>


{{ABSTRACT_PUBMED_11988090}}
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
</div>
<div class="pdbe-citations 1kuj" style="background-color:#fffaf0;"></div>


==About this Structure==
==See Also==
[[1kuj]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Artocarpus_integer Artocarpus integer]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1KUJ OCA].
*[[Agglutinin 3D structures|Agglutinin 3D structures]]
 
== References ==
==Reference==
<references/>
<ref group="xtra">PMID:011988090</ref><references group="xtra"/>
__TOC__
</StructureSection>
[[Category: Artocarpus integer]]
[[Category: Artocarpus integer]]
[[Category: Astoul, C H.]]
[[Category: Large Structures]]
[[Category: Barre, A.]]
[[Category: Astoul CH]]
[[Category: Bourne, Y.]]
[[Category: Barre A]]
[[Category: Damme, E J.M Van.]]
[[Category: Bourne Y]]
[[Category: Menu-Bouaouiche, L.]]
[[Category: Menu-Bouaouiche L]]
[[Category: Peumans, W J.]]
[[Category: Peumans WJ]]
[[Category: Rouge, P.]]
[[Category: Rouge P]]
[[Category: Zamboni, V.]]
[[Category: Van Damme EJM]]
[[Category: Beta-prism fold]]
[[Category: Zamboni V]]
[[Category: Carbohydrate binding]]
[[Category: Lectin]]
[[Category: Sugar binding protein]]

Latest revision as of 09:04, 16 August 2023

Crystal structure of Jacalin complexed with 1-O-methyl-alpha-D-mannose

1kuj, resolution 2.00Å

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA