1yuz: Difference between revisions

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[[Image:1yuz.png|left|200px]]


{{STRUCTURE_1yuz|  PDB=1yuz  |  SCENE=  }}
==Partially Reduced State of Nigerythrin==
 
<StructureSection load='1yuz' size='340' side='right'caption='[[1yuz]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
===Partially Reduced State of Nigerythrin===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[1yuz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._Hildenborough Desulfovibrio vulgaris str. Hildenborough]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YUZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YUZ FirstGlance]. <br>
{{ABSTRACT_PUBMED_15895271}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yuz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yuz OCA], [https://pdbe.org/1yuz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yuz RCSB], [https://www.ebi.ac.uk/pdbsum/1yuz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yuz ProSAT]</span></td></tr>
[[1yuz]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris Desulfovibrio vulgaris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YUZ OCA].  
</table>
 
== Function ==
==Reference==
[https://www.uniprot.org/uniprot/NIGY_DESVH NIGY_DESVH] Exhibits NADH peroxidase activity (in vitro).
<ref group="xtra">PMID:015895271</ref><references group="xtra"/>
== Evolutionary Conservation ==
[[Category: Desulfovibrio vulgaris]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Iyer, R B.]]
Check<jmol>
[[Category: Kurtz, D M.]]
  <jmolCheckbox>
[[Category: Lanzilotta, W N.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yu/1yuz_consurf.spt"</scriptWhenChecked>
[[Category: Silaghi-Dumitrescu, R.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Diiron center]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Electron transfer]]
  </jmolCheckbox>
[[Category: Hemerythrin]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yuz ConSurf].
[[Category: Oxidoreductase]]
<div style="clear:both"></div>
[[Category: Rubredoxin]]
__TOC__
[[Category: Rubrythrin]]
</StructureSection>
[[Category: Desulfovibrio vulgaris str. Hildenborough]]
[[Category: Large Structures]]
[[Category: Iyer RB]]
[[Category: Kurtz DM]]
[[Category: Lanzilotta WN]]
[[Category: Silaghi-Dumitrescu R]]
Retrieved from "https://proteopedia.org/1yuz"