1yqe: Difference between revisions
From Proteopedia
Jump to navigationJump to search
No edit summary |
No edit summary |
||
| (7 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
==Crystal Structure of Conserved Protein of Unknown Function AF0625== | |||
<StructureSection load='1yqe' size='340' side='right'caption='[[1yqe]], [[Resolution|resolution]] 1.83Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[1yqe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YQE FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83Å</td></tr> | |||
== | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr> | ||
[[1yqe]] is a 1 chain structure with sequence from [ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yqe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yqe OCA], [https://pdbe.org/1yqe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yqe RCSB], [https://www.ebi.ac.uk/pdbsum/1yqe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yqe ProSAT], [https://www.topsan.org/Proteins/MCSG/1yqe TOPSAN]</span></td></tr> | ||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/DTDA_ARCFU DTDA_ARCFU] D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.[HAMAP-Rule:MF_00562] | |||
== Evolutionary Conservation == | |||
[[Image:Consurf_key_small.gif|200px|right]] | |||
Check<jmol> | |||
<jmolCheckbox> | |||
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yq/1yqe_consurf.spt"</scriptWhenChecked> | |||
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | |||
<text>to colour the structure by Evolutionary Conservation</text> | |||
</jmolCheckbox> | |||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yqe ConSurf]. | |||
<div style="clear:both"></div> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Archaeoglobus fulgidus]] | [[Category: Archaeoglobus fulgidus]] | ||
[[Category: Dong | [[Category: Large Structures]] | ||
[[Category: Edwards | [[Category: Dong A]] | ||
[[Category: Kudritskam | [[Category: Edwards A]] | ||
[[Category: Liu | [[Category: Kudritskam M]] | ||
[[Category: Liu Y]] | |||
[[Category: Pai | [[Category: Pai EF]] | ||
[[Category: Savchenko | [[Category: Savchenko A]] | ||
[[Category: Skarina | [[Category: Skarina T]] | ||
Latest revision as of 08:59, 14 February 2024
Crystal Structure of Conserved Protein of Unknown Function AF0625
| ||||||||||||
