2cad: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
No edit summary
OCA (talk | contribs)
No edit summary
 
(8 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2cad.png|left|200px]]


{{STRUCTURE_2cad|  PDB=2cad  |  SCENE= }}
==NikR from Helicobacter pylori in closed trans-conformation and nickel bound to 2F, 2X and 2I sites.==
 
<StructureSection load='2cad' size='340' side='right'caption='[[2cad]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
===NIKR FROM HELICOBACTER PYLORI IN CLOSED TRANS-CONFORMATION AND NICKEL BOUND TO 2F, 2X AND 2I SITES.===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2cad]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Helicobacter_pylori_26695 Helicobacter pylori 26695]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CAD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2CAD FirstGlance]. <br>
{{ABSTRACT_PUBMED_16872629}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CIT:CITRIC+ACID'>CIT</scene>, <scene name='pdbligand=FMT:FORMIC+ACID'>FMT</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2cad FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2cad OCA], [https://pdbe.org/2cad PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2cad RCSB], [https://www.ebi.ac.uk/pdbsum/2cad PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2cad ProSAT]</span></td></tr>
[[2cad]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Helicobacter_pylori Helicobacter pylori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2CAD OCA].  
</table>
 
== Function ==
==Reference==
[https://www.uniprot.org/uniprot/NIKR_HELPY NIKR_HELPY] Transcriptional regulator (Potential).
<ref group="xtra">PMID:016872629</ref><references group="xtra"/>
== Evolutionary Conservation ==
[[Category: Helicobacter pylori]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Dian, C.]]
Check<jmol>
[[Category: Kapp, U.]]
  <jmolCheckbox>
[[Category: Labigne, A.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ca/2cad_consurf.spt"</scriptWhenChecked>
[[Category: Mcsweeney, S M.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Schauer, K.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Terradot, L.]]
  </jmolCheckbox>
[[Category: Acidic-adaptive response]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2cad ConSurf].
[[Category: Dna-binding]]
<div style="clear:both"></div>
[[Category: Hypothetical protein]]
__TOC__
[[Category: Metal-binding]]
</StructureSection>
[[Category: Nickel]]
[[Category: Helicobacter pylori 26695]]
[[Category: Nickel uptake]]
[[Category: Large Structures]]
[[Category: Ribbon-helix-helix]]
[[Category: Dian C]]
[[Category: Transcription regulator]]
[[Category: Kapp U]]
[[Category: Transcriptional regulation]]
[[Category: Labigne A]]
[[Category: McSweeney SM]]
[[Category: Schauer K]]
[[Category: Terradot L]]