2d5m: Difference between revisions

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[[Image:2d5m.png|left|200px]]


{{STRUCTURE_2d5m|  PDB=2d5m  |  SCENE=  }}
==Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)==
 
<StructureSection load='2d5m' size='340' side='right'caption='[[2d5m]], [[Resolution|resolution]] 1.05&Aring;' scene=''>
===Flavoredoxin of Desulfovibrio vulgaris (Miyazaki F)===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2d5m]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'Miyazaki_F' Desulfovibrio vulgaris str. 'Miyazaki F']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5M OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2D5M FirstGlance]. <br>
{{ABSTRACT_PUBMED_019708087}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.05&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FMN:FLAVIN+MONONUCLEOTIDE'>FMN</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2d5m FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2d5m OCA], [https://pdbe.org/2d5m PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2d5m RCSB], [https://www.ebi.ac.uk/pdbsum/2d5m PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2d5m ProSAT]</span></td></tr>
[[2d5m]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfovibrio_vulgaris_str._'miyazaki_f' Desulfovibrio vulgaris str. 'miyazaki f']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2D5M OCA].  
</table>
[[Category: Desulfovibrio vulgaris str. 'miyazaki f']]
== Function ==
[[Category: Higuchi, Y.]]
[https://www.uniprot.org/uniprot/Q4W5X6_DESVU Q4W5X6_DESVU]  
[[Category: Shibata, N.]]
== Evolutionary Conservation ==
[[Category: Ueda, Y.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Electron transport]]
Check<jmol>
[[Category: Flavoprotein]]
  <jmolCheckbox>
[[Category: Fmn binding]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/d5/2d5m_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2d5m ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Desulfovibrio vulgaris str. 'Miyazaki F']]
[[Category: Large Structures]]
[[Category: Higuchi Y]]
[[Category: Shibata N]]
[[Category: Ueda Y]]
Retrieved from "https://proteopedia.org/2d5m"