2gpt: Difference between revisions

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[[Image:2gpt.png|left|200px]]


{{STRUCTURE_2gpt|  PDB=2gpt  |  SCENE=  }}
==Crystal structure of Arabidopsis Dehydroquinate dehydratase-shikimate dehydrogenase in complex with tartrate and shikimate==
 
<StructureSection load='2gpt' size='340' side='right'caption='[[2gpt]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
===Crystal structure of Arabidopsis Dehydroquinate dehydratase-shikimate dehydrogenase in complex with tartrate and shikimate===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[2gpt]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GPT FirstGlance]. <br>
{{ABSTRACT_PUBMED_16784230}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.95&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SKM:(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC+ACID'>SKM</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gpt FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gpt OCA], [https://pdbe.org/2gpt PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gpt RCSB], [https://www.ebi.ac.uk/pdbsum/2gpt PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gpt ProSAT]</span></td></tr>
[[2gpt]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GPT OCA].  
</table>
 
== Function ==
==Reference==
[https://www.uniprot.org/uniprot/DHQSD_ARATH DHQSD_ARATH]  
<ref group="xtra">PMID:016784230</ref><ref group="xtra">PMID:017649975</ref><references group="xtra"/>
== Evolutionary Conservation ==
[[Category: Arabidopsis thaliana]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Christendat, D.]]
Check<jmol>
[[Category: Singh, S A.]]
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/2gpt_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gpt ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Arabidopsis thaliana]]
[[Category: Arabidopsis thaliana]]
[[Category: Aroe]]
[[Category: Large Structures]]
[[Category: Bifunctional enzyme]]
[[Category: Christendat D]]
[[Category: Lyase]]
[[Category: Singh SA]]
[[Category: Oxidoreductase]]
[[Category: Shikimate]]
[[Category: Shikimate dehydrogenase]]
[[Category: Tartrate]]
[[Category: Type i dehydroquinate dehydratase]]