3dkx: Difference between revisions

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[[Image:3dkx.png|left|200px]]


{{STRUCTURE_3dkx|  PDB=3dkx  |  SCENE=  }}
==Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution==
 
<StructureSection load='3dkx' size='340' side='right'caption='[[3dkx]], [[Resolution|resolution]] 2.70&Aring;' scene=''>
===Crystal Structure of the replication initiator protein encoded on plasmid pMV158 (RepB), trigonal form, to 2.7 Ang resolution===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3dkx]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_agalactiae Streptococcus agalactiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DKX FirstGlance]. <br>
{{ABSTRACT_PUBMED_19440202}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dkx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dkx OCA], [https://pdbe.org/3dkx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dkx RCSB], [https://www.ebi.ac.uk/pdbsum/3dkx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dkx ProSAT]</span></td></tr>
[[3dkx]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptococcus_agalactiae Streptococcus agalactiae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DKX OCA].  
</table>
 
== Function ==
==Reference==
[https://www.uniprot.org/uniprot/REPB_STRAG REPB_STRAG] Is essential for plasmid replication. Nicks the positive strand at the plus origin of replication.
<ref group="xtra">PMID:019440202</ref><references group="xtra"/>
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/dk/3dkx_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3dkx ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Streptococcus agalactiae]]
[[Category: Streptococcus agalactiae]]
[[Category: Blanco, A G.]]
[[Category: Blanco AG]]
[[Category: Boer, D R.]]
[[Category: Boer DR]]
[[Category: Coll, M.]]
[[Category: Coll M]]
[[Category: Espinosa, M.]]
[[Category: Del Solar G]]
[[Category: Gomis-Ruth, F X.]]
[[Category: Espinosa M]]
[[Category: Ruiz-Maso, J A.]]
[[Category: Gomis-Ruth FX]]
[[Category: Solar, G Del.]]
[[Category: Ruiz-Maso JA]]
[[Category: Uson, I.]]
[[Category: Uson I]]
[[Category: Vives-Llacer, M.]]
[[Category: Vives-Llacer M]]
[[Category: Dna replication]]
[[Category: Flexible nuclease domain]]
[[Category: Hexamer]]
[[Category: Nuclease]]
[[Category: Plasmid replication]]
[[Category: Replication]]
[[Category: Replication initiation]]
[[Category: Replication initiator]]
Retrieved from "https://proteopedia.org/3dkx"