3w44: Difference between revisions
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The | ==Crystal structure of RsbX, selenomethionine derivative== | ||
<StructureSection load='3w44' size='340' side='right'caption='[[3w44]], [[Resolution|resolution]] 2.30Å' scene=''> | |||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[3w44]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W44 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W44 FirstGlance]. <br> | |||
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr> | |||
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | |||
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[3w40|3w40]], [[3w41|3w41]], [[3w42|3w42]], [[3w43|3w43]], [[3w45|3w45]]</div></td></tr> | |||
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">BSU04740, rsbX ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=224308 BACSU])</td></tr> | |||
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phosphoserine_phosphatase Phosphoserine phosphatase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.1.3.3 3.1.3.3] </span></td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w44 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w44 OCA], [https://pdbe.org/3w44 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w44 RCSB], [https://www.ebi.ac.uk/pdbsum/3w44 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w44 ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[[https://www.uniprot.org/uniprot/RSBX_BACSU RSBX_BACSU]] Negative regulator of sigma-B activity. Dephosphorylates RsbS. Plays a role both in maintaining low sigma-B activity during growth and in reestablishing prestress sigma-B activity after induction. Could have a negative feedback role by indirectly communicating sigma-B protein levels.<ref>PMID:1592822</ref> <ref>PMID:8468294</ref> <ref>PMID:8824586</ref> <ref>PMID:9658013</ref> | |||
<div style="background-color:#fffaf0;"> | |||
== Publication Abstract from PubMed == | |||
In the general stress response of Bacillus subtilis, which is governed by the sigma factor sigma(B), stress signalling is relayed by a cascade of Rsb proteins that regulate sigma(B) activity. RsbX, a PPM II phosphatase, halts the response by dephosphorylating the stressosome composed of RsbR and RsbS. The crystal structure of RsbX reveals a reorganization of the catalytic centre, with the second Mn(2+) ion uniquely coordinated by Gly47 O from the beta4-alpha1 loop instead of a water molecule as in PPM I phosphatases. An extra helical turn of alpha1 tilts the loop towards the metal-binding site, and the beta2-beta3 loop swings outwards to accommodate this tilting. The residues critical for this defining feature of the PPM II phosphatases are highly conserved. Formation of the catalytic centre is metal-specific, as crystallization with Mg(2+) ions resulted in a shift of the beta4-alpha1 loop that led to loss of the second ion. RsbX also lacks the flap subdomain characteristic of PPM I phosphatases. On the basis of a stressosome model, the activity of RsbX towards RsbR-P and RsbS-P may be influenced by the different accessibilities of their phosphorylation sites. | |||
Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis.,Teh AH, Makino M, Hoshino T, Baba S, Shimizu N, Yamamoto M, Kumasaka T Acta Crystallogr D Biol Crystallogr. 2015 Jun;71(Pt 6):1392-9. doi:, 10.1107/S1399004715007166. Epub 2015 May 23. PMID:26057679<ref>PMID:26057679</ref> | |||
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |||
</div> | |||
<div class="pdbe-citations 3w44" style="background-color:#fffaf0;"></div> | |||
==See Also== | |||
*[[Phosphoserine phosphatase|Phosphoserine phosphatase]] | |||
== References == | |||
<references/> | |||
__TOC__ | |||
</StructureSection> | |||
[[Category: Bacsu]] | |||
[[Category: Large Structures]] | |||
[[Category: Phosphoserine phosphatase]] | |||
[[Category: Baba, S]] | |||
[[Category: Kumasaka, T]] | |||
[[Category: Makino, M]] | |||
[[Category: Shimizu, N]] | |||
[[Category: Teh, A H]] | |||
[[Category: Yamamoto, M]] | |||
[[Category: Dephosphorylation]] | |||
[[Category: Environmental stress]] | |||
[[Category: Gene expression regulation]] | |||
[[Category: Hydrolase]] | |||
[[Category: Hydrolase protein phosphatase]] | |||
[[Category: Magnesium/manganese binding]] | |||
[[Category: Phosphatase]] | |||
[[Category: Phosphoric monoester hydrolase]] | |||
[[Category: Protein structure]] | |||
[[Category: Signaling protein]] | |||
[[Category: Stressosome]] | |||
[[Category: Tertiary]] | |||
Latest revision as of 05:22, 3 August 2022
Crystal structure of RsbX, selenomethionine derivative
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Proteopedia Page Contributors and Editors (what is this?)
Categories:
- Bacsu
- Large Structures
- Phosphoserine phosphatase
- Baba, S
- Kumasaka, T
- Makino, M
- Shimizu, N
- Teh, A H
- Yamamoto, M
- Dephosphorylation
- Environmental stress
- Gene expression regulation
- Hydrolase
- Hydrolase protein phosphatase
- Magnesium/manganese binding
- Phosphatase
- Phosphoric monoester hydrolase
- Protein structure
- Signaling protein
- Stressosome
- Tertiary