1yem: Difference between revisions

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[[Image:1yem.gif|left|200px]]<br /><applet load="1yem" size="350" color="white" frame="true" align="right" spinBox="true"
caption="1yem, resolution 2.300&Aring;" />
'''Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus'''<br />


==About this Structure==
==Conserved hypothetical protein Pfu-838710-001 from Pyrococcus furiosus==
1YEM is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Pyrococcus_furiosus Pyrococcus furiosus] with <scene name='pdbligand=PT:'>PT</scene> and <scene name='pdbligand=UNX:'>UNX</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. This structure supersedes the now removed PDB entry 1XKC. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEM OCA].
<StructureSection load='1yem' size='340' side='right'caption='[[1yem]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
[[Category: Pyrococcus furiosus]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[1yem]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1xkc 1xkc]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YEM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YEM FirstGlance]. <br>
[[Category: Adams, M W.W.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
[[Category: Chang, J.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PT:PLATINUM+(II)+ION'>PT</scene>, <scene name='pdbligand=UNX:UNKNOWN+ATOM+OR+ION'>UNX</scene></td></tr>
[[Category: Chen, L.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yem FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yem OCA], [https://pdbe.org/1yem PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yem RCSB], [https://www.ebi.ac.uk/pdbsum/1yem PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yem ProSAT], [https://www.topsan.org/Proteins/SECSG/1yem TOPSAN]</span></td></tr>
[[Category: III, W B.Arendall.]]
</table>
[[Category: Jr., F E.Jenney.]]
== Function ==
[[Category: Lee, D.]]
[https://www.uniprot.org/uniprot/Q8U2H2_PYRFU Q8U2H2_PYRFU]  
[[Category: Lin, D.]]
== Evolutionary Conservation ==
[[Category: Liu, Z J.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Ng, J D.]]
Check<jmol>
[[Category: Praissman, J L.]]
  <jmolCheckbox>
[[Category: Richardson, D C.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ye/1yem_consurf.spt"</scriptWhenChecked>
[[Category: Richardson, J S.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Rose, J P.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: SECSG, Southeast Collaboratory for Structural Genomics.]]
  </jmolCheckbox>
[[Category: Shah, A.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yem ConSurf].
[[Category: Tempel, W.]]
<div style="clear:both"></div>
[[Category: Wang, B C.]]
__TOC__
[[Category: Yang, H.]]
</StructureSection>
[[Category: PT]]
[[Category: Large Structures]]
[[Category: UNX]]
[[Category: Pyrococcus furiosus DSM 3638]]
[[Category: conserved hypothetical protein]]
[[Category: Adams MWW]]
[[Category: hyperthermophile]]
[[Category: Arendall III WB]]
[[Category: protein structure initiative]]
[[Category: Chang J]]
[[Category: psi]]
[[Category: Chen L]]
[[Category: pyrococcus furiosus]]
[[Category: Jenney Jr FE]]
[[Category: secsg]]
[[Category: Lee D]]
[[Category: southeast collaboratory for structural genomics]]
[[Category: Lin D]]
[[Category: structural genomics]]
[[Category: Liu Z-J]]
 
[[Category: Ng JD]]
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:04:30 2008''
[[Category: Praissman JL]]
[[Category: Richardson DC]]
[[Category: Richardson JS]]
[[Category: Rose JP]]
[[Category: Shah A]]
[[Category: Tempel W]]
[[Category: Wang B-C]]
[[Category: Yang H]]
Retrieved from "https://proteopedia.org/1yem"