3vdn: Difference between revisions

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~~[[Image:3vdn.jpg|left|200px]]~~

~~{{STRUCTURE_3vdn~~| ~~PDB~~=3vdn | ~~SCENE~~= }}

==Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP==

== Structural highlights ==

<table><tr><td colspan='2'>[[3vdn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_hygroscopicus_subsp._limoneus Streptomyces hygroscopicus subsp. limoneus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VDN OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=3VDN FirstGlance].

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55Å</td></tr>

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=3vdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vdn OCA], [https://pdbe.org/3vdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vdn RCSB], [https://www.ebi.ac.uk/pdbsum/3vdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vdn ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/VLDE_STRHL VLDE_STRHL] Involved in the biosynthesis of the antifungal agent validamycin A (PubMed:16725283). Catalyzes the condensation between GDP-valienol and validamine 7-phosphate via a nonglycosidic C-N bond formation to yield validoxylamine A 7'-phosphate (PubMed:21766819).<ref>PMID:16725283</ref> <ref>PMID:21766819</ref>

==~~=Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP=~~==

==See Also==

*[[Glycosyltransferase 3D structures|Glycosyltransferase 3D structures]]

== References ==

==~~About this Structure~~==

[[~~3vdn]] is a 1 chain structure with sequence from [http~~:~~//en.wikipedia.org/wiki/Streptomyces_hygroscopicus_subsp._limoneus Streptomyces hygroscopicus subsp. limoneus~~]~~. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VDN OCA~~].

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Streptomyces hygroscopicus subsp. limoneus]]

[[Category: Asamizu, S.]]

[[Category: Asamizu S]]

[[Category: Cavalier~~, M C.~~]]

[[Category: Cavalier MC]]

[[Category: Lee, Y H.]]

[[Category: Lee Y-H]]

[[Category: Mahmud, T.]]

[[Category: Mahmud T]]

[[Category: Neau, D.]]

[[Category: Neau D]]

[[Category: Yim, Y S~~.]]~~

[[Category: Yim Y-S]]

~~[[Category: Rossmann fold]]~~

~~[[Category: Transferase~~]]

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@@ Line 1: / Line 1: @@
-[[Image:3vdn.jpg|left|200px]]
-{{STRUCTURE_3vdn|  PDB=3vdn  |  SCENE=  }}
+==Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP==
+<StructureSection load='3vdn' size='340' side='right'caption='[[3vdn]], [[Resolution|resolution]] 2.55&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3vdn]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_hygroscopicus_subsp._limoneus Streptomyces hygroscopicus subsp. limoneus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VDN OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VDN FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.55&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GDP:GUANOSINE-5-DIPHOSPHATE'>GDP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vdn FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vdn OCA], [https://pdbe.org/3vdn PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vdn RCSB], [https://www.ebi.ac.uk/pdbsum/3vdn PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vdn ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/VLDE_STRHL VLDE_STRHL] Involved in the biosynthesis of the antifungal agent validamycin A (PubMed:16725283). Catalyzes the condensation between GDP-valienol and validamine 7-phosphate via a nonglycosidic C-N bond formation to yield validoxylamine A 7'-phosphate (PubMed:21766819).<ref>PMID:16725283</ref> <ref>PMID:21766819</ref>
-===Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP===
+==See Also==
+*[[Glycosyltransferase 3D structures|Glycosyltransferase 3D structures]]
+== References ==
-==About this Structure==
+<references/>
-[[3vdn]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Streptomyces_hygroscopicus_subsp._limoneus Streptomyces hygroscopicus subsp. limoneus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VDN OCA].
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Streptomyces hygroscopicus subsp. limoneus]]
-[[Category: Asamizu, S.]]
+[[Category: Asamizu S]]
-[[Category: Cavalier, M C.]]
+[[Category: Cavalier MC]]
-[[Category: Lee, Y H.]]
+[[Category: Lee Y-H]]
-[[Category: Mahmud, T.]]
+[[Category: Mahmud T]]
-[[Category: Neau, D.]]
+[[Category: Neau D]]
-[[Category: Yim, Y S.]]
+[[Category: Yim Y-S]]
-[[Category: Rossmann fold]]
-[[Category: Transferase]]