1yqe: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(14 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1yqe.gif|left|200px]]<br /><applet load="1yqe" size="350" color="white" frame="true" align="right" spinBox="true"
caption="1yqe, resolution 1.83&Aring;" />
'''Crystal Structure of Conserved Protein of Unknown Function AF0625'''<br />


==About this Structure==
==Crystal Structure of Conserved Protein of Unknown Function AF0625==
1YQE is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus] with <scene name='pdbligand=POP:'>POP</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQE OCA].  
<StructureSection load='1yqe' size='340' side='right'caption='[[1yqe]], [[Resolution|resolution]] 1.83&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[1yqe]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YQE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YQE FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.83&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yqe FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yqe OCA], [https://pdbe.org/1yqe PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yqe RCSB], [https://www.ebi.ac.uk/pdbsum/1yqe PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yqe ProSAT], [https://www.topsan.org/Proteins/MCSG/1yqe TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/DTDA_ARCFU DTDA_ARCFU] D-aminoacyl-tRNA deacylase with broad substrate specificity. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo.[HAMAP-Rule:MF_00562]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yq/1yqe_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1yqe ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Archaeoglobus fulgidus]]
[[Category: Archaeoglobus fulgidus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Dong, A.]]
[[Category: Dong A]]
[[Category: Edwards, A.]]
[[Category: Edwards A]]
[[Category: Kudritskam, M.]]
[[Category: Kudritskam M]]
[[Category: Liu, Y.]]
[[Category: Liu Y]]
[[Category: MCSG, Midwest Center for Structural Genomics.]]
[[Category: Pai EF]]
[[Category: Pai, E F.]]
[[Category: Savchenko A]]
[[Category: Savchenko, A.]]
[[Category: Skarina T]]
[[Category: Skarina, T.]]
[[Category: POP]]
[[Category: af0625]]
[[Category: mcsg]]
[[Category: midwest center for structural genomics]]
[[Category: protein structure initiative]]
[[Category: psi]]
[[Category: structural genomics]]
[[Category: sulfur sad]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 16:07:59 2008''
Retrieved from "https://proteopedia.org/1yqe"