1wmd: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,331,615 edits
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:1wmd.png|left|200px]]


{{STRUCTURE_1wmd|  PDB=1wmd  |  SCENE=  }}
==Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)==
 
<StructureSection load='1wmd' size='340' side='right'caption='[[1wmd]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
===Crystal Structure of alkaline serine protease KP-43 from Bacillus sp. KSM-KP43 (1.30 angstrom, 100 K)===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[1wmd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._KSM-KP43 Bacillus sp. KSM-KP43]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WMD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1WMD FirstGlance]. <br>
{{ABSTRACT_PUBMED_15342641}}
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
 
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=DIO:1,4-DIETHYLENE+DIOXIDE'>DIO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
==About this Structure==
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1wmd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1wmd OCA], [https://pdbe.org/1wmd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1wmd RCSB], [https://www.ebi.ac.uk/pdbsum/1wmd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1wmd ProSAT]</span></td></tr>
[[1wmd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_sp. Bacillus sp.]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1WMD OCA].  
</table>
 
== Function ==
==Reference==
[https://www.uniprot.org/uniprot/Q93UV9_9BACI Q93UV9_9BACI]  
<ref group="xtra">PMID:015342641</ref><ref group="xtra">PMID:011320315</ref><references group="xtra"/>
== Evolutionary Conservation ==
[[Category: Bacillus sp.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Fujihashi, M.]]
Check<jmol>
[[Category: Horikoshi, K.]]
  <jmolCheckbox>
[[Category: Ito, S.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/wm/1wmd_consurf.spt"</scriptWhenChecked>
[[Category: Kita, A.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: Miki, K.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Nonaka, T.]]
  </jmolCheckbox>
[[Category: Saeki, K.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1wmd ConSurf].
[[Category: Alpha-beta hydrolase fold]]
<div style="clear:both"></div>
[[Category: Hydrolase]]
__TOC__
[[Category: Jelly-roll beta-barrel]]
</StructureSection>
[[Category: Bacillus sp. KSM-KP43]]
[[Category: Large Structures]]
[[Category: Fujihashi M]]
[[Category: Horikoshi K]]
[[Category: Ito S]]
[[Category: Kita A]]
[[Category: Miki K]]
[[Category: Nonaka T]]
[[Category: Saeki K]]
Retrieved from "https://proteopedia.org/1wmd"