4ddw: Difference between revisions

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~~[[Image:4ddw.png|left|200px]]~~

~~{{STRUCTURE_4ddw| PDB=4ddw | SCENE= }}~~

==Thermotoga maritima reverse gyrase, c-centered orthorhombic form==

===Thermotoga maritima reverse gyrase, c-centered orthorhombic form===

== Structural highlights ==

<table><tr><td colspan='2'>[[4ddw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DDW OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=4DDW FirstGlance].

~~{{ABSTRACT_PUBMED_23209025}}~~

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.9Å</td></tr>

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>

==~~About this Structure~~==

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=4ddw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ddw OCA], [https://pdbe.org/4ddw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ddw RCSB], [https://www.ebi.ac.uk/pdbsum/4ddw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ddw ProSAT]</td></tr>

[[4ddw]] is a 1 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DDW OCA].

</table>

== Function ==

[https://www.uniprot.org/uniprot/RGYR_THEMA RGYR_THEMA] Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication.

==See Also==

*[[Gyrase|Gyrase]]

*[[Gyrase 3D Structures|Gyrase 3D Structures]]

__TOC__

</StructureSection>

[[Category: Large Structures]]

[[Category: Thermotoga maritima]]

[[Category: Klostermeier, D.]]

[[Category: Klostermeier D]]

[[Category: Rudolph~~, M G.]]~~

[[Category: Rudolph MG]]

~~[[Category: Archaea]]~~

~~[[Category: Dna supercoiling]]~~

~~[[Category: Helicase]]~~

~~[[Category: Hydrolase]]~~

~~[[Category: Topoisomerase~~]]

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@@ Line 1: / Line 1: @@
-[[Image:4ddw.png|left|200px]]
-{{STRUCTURE_4ddw|  PDB=4ddw  |  SCENE=  }}
+==Thermotoga maritima reverse gyrase, c-centered orthorhombic form==
+<StructureSection load='4ddw' size='340' side='right'caption='[[4ddw]], [[Resolution|resolution]] 3.90&Aring;' scene=''>
-===Thermotoga maritima reverse gyrase, c-centered orthorhombic form===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4ddw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DDW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DDW FirstGlance]. <br>
-{{ABSTRACT_PUBMED_23209025}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.9&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4ddw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4ddw OCA], [https://pdbe.org/4ddw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4ddw RCSB], [https://www.ebi.ac.uk/pdbsum/4ddw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4ddw ProSAT]</span></td></tr>
-[[4ddw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Thermotoga_maritima Thermotoga maritima]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DDW OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/RGYR_THEMA RGYR_THEMA] Modifies the topological state of DNA by introducing positive supercoils in an ATP-dependent process. It cleaves transiently a single DNA strand and remains covalently bound to the 5' DNA end through a tyrosine residue. May be involved in rewinding the DNA strands in the regions of the chromosome that have opened up to allow transcription or replication.
 ==See Also==
-*[[Gyrase|Gyrase]]
+*[[Gyrase 3D Structures|Gyrase 3D Structures]]
+__TOC__
+</StructureSection>
+[[Category: Large Structures]]
 [[Category: Thermotoga maritima]]
-[[Category: Klostermeier, D.]]
+[[Category: Klostermeier D]]
-[[Category: Rudolph, M G.]]
+[[Category: Rudolph MG]]
-[[Category: Archaea]]
-[[Category: Dna supercoiling]]
-[[Category: Helicase]]
-[[Category: Hydrolase]]
-[[Category: Topoisomerase]]