3exa: Difference between revisions

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[[Image:3exa.png|left|200px]]


{{STRUCTURE_3exa|  PDB=3exa  |  SCENE=  }}
==Crystal structure of the full-length tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus halodurans, Northeast Structural Genomics Consortium target BhR41.==
 
<StructureSection load='3exa' size='340' side='right'caption='[[3exa]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
===Crystal structure of the full-length tRNA isopentenylpyrophosphate transferase (BH2366) from Bacillus halodurans, Northeast Structural Genomics Consortium target BhR41.===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[3exa]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Alkalihalobacillus_halodurans Alkalihalobacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXA FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[3exa]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_halodurans Bacillus halodurans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXA OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exa OCA], [https://pdbe.org/3exa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exa RCSB], [https://www.ebi.ac.uk/pdbsum/3exa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exa ProSAT], [https://www.topsan.org/Proteins/NESGC/3exa TOPSAN]</span></td></tr>
[[Category: Bacillus halodurans]]
</table>
[[Category: TRNA dimethylallyltransferase]]
== Function ==
[[Category: Abashidze, M.]]
[https://www.uniprot.org/uniprot/MIAA_HALH5 MIAA_HALH5] Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A).
[[Category: Acton, T B.]]
== Evolutionary Conservation ==
[[Category: Baran, M C.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: Cunningham, K.]]
Check<jmol>
[[Category: Forouhar, F.]]
  <jmolCheckbox>
[[Category: Hunt, J F.]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exa_consurf.spt"</scriptWhenChecked>
[[Category: Janjua, H.]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: Liu, J.]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: Ma, L-.C.]]
  </jmolCheckbox>
[[Category: Montelione, G T.]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3exa ConSurf].
[[Category: NESG, Northeast Structural Genomics Consortium.]]
<div style="clear:both"></div>
[[Category: Neely, H.]]
__TOC__
[[Category: Rost, B.]]
</StructureSection>
[[Category: Seetharaman, J.]]
[[Category: Alkalihalobacillus halodurans]]
[[Category: Shastry, R.]]
[[Category: Large Structures]]
[[Category: Tong, L.]]
[[Category: Abashidze M]]
[[Category: Xiao, R.]]
[[Category: Acton TB]]
[[Category: Alpha-beta protein]]
[[Category: Baran MC]]
[[Category: Atp-binding]]
[[Category: Cunningham K]]
[[Category: Nesg]]
[[Category: Forouhar F]]
[[Category: Northeast structural genomics consortium]]
[[Category: Hunt JF]]
[[Category: Nucleotide-binding]]
[[Category: Janjua H]]
[[Category: Nucleotidyltransferase]]
[[Category: Liu J]]
[[Category: Protein structure initiative]]
[[Category: Ma L-C]]
[[Category: Psi-2]]
[[Category: Montelione GT]]
[[Category: Structural genomic]]
[[Category: Neely H]]
[[Category: Transferase]]
[[Category: Rost B]]
[[Category: Trna processing]]
[[Category: Seetharaman J]]
[[Category: Shastry R]]
[[Category: Tong L]]
[[Category: Xiao R]]