4gcs: Difference between revisions

(4 intermediate revisions by the same user not shown)

Line 1:

~~[[Image:4gcs.png|left|200px]]~~

~~{{STRUCTURE_4gcs| PDB=4gcs | SCENE= }}~~

==Crystal Structure of E. coli OmpF porin in complex with Ertapenem==

===Crystal Structure of E. coli OmpF porin in complex with Ertapenem===

== Structural highlights ==

<table><tr><td colspan='2'>[[4gcs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GCS OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=4GCS FirstGlance].

~~{{ABSTRACT_PUBMED_23201272}}~~

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.87Å</td></tr>

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1RG:(4R,5S)-3-({(3S,5S)-5-[(3-CARBOXYPHENYL)CARBAMOYL]PYRROLIDIN-3-YL}SULFANYL)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-4-METHYL-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC+ACID'>1RG</scene></td></tr>

==~~About this Structure~~==

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=4gcs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gcs OCA], [https://pdbe.org/4gcs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gcs RCSB], [https://www.ebi.ac.uk/pdbsum/4gcs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gcs ProSAT]</td></tr>

[[4gcs]] is a 2 chain structure with sequence from [~~http~~://en.wikipedia.org/wiki/~~Escherichia_coli_k~~-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GCS OCA].

</table>

== Function ==

[https://www.uniprot.org/uniprot/OMPF_ECOLI OMPF_ECOLI] Forms pores that allow passive diffusion of small molecules across the outer membrane. It is also a receptor for the bacteriophage T2.<ref>PMID:19721064</ref>

==See Also==

*[[Porin|Porin]]

*[[Porin 3D structures|Porin 3D structures]]

[[Category: Escherichia coli k-12]]

== References ==

[[Category: ~~Roux, B.~~]]

[[Category: ~~Ziervogel,~~ B K.]]

__TOC__

[[Category: ~~Beta-barrel]]~~

</StructureSection>

~~[[Category: Ertapenem binding]]~~

[[Category: Escherichia coli K-12]]

~~[[Category: Membrane protein-antibiotic complex]]~~

[[Category: Large Structures]]

~~[[Category: Non-specific channel]]~~

[[Category: Roux B]]

~~[[Category: Outer membrane]]~~

[[Category: Ziervogel BK]]

~~[[Category: Protein-drug complex]]~~

~~[[Category: Trimer~~]]

Navigation menu

Page actions

Page actions

Personal tools

Navigation

Search

Tools

@@ Line 1: / Line 1: @@
-[[Image:4gcs.png|left|200px]]
-{{STRUCTURE_4gcs|  PDB=4gcs  |  SCENE=  }}
+==Crystal Structure of E. coli OmpF porin in complex with Ertapenem==
+<StructureSection load='4gcs' size='340' side='right'caption='[[4gcs]], [[Resolution|resolution]] 1.87&Aring;' scene=''>
-===Crystal Structure of E. coli OmpF porin in complex with Ertapenem===
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4gcs]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GCS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4GCS FirstGlance]. <br>
-{{ABSTRACT_PUBMED_23201272}}
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.87&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1RG:(4R,5S)-3-({(3S,5S)-5-[(3-CARBOXYPHENYL)CARBAMOYL]PYRROLIDIN-3-YL}SULFANYL)-5-[(1S,2R)-1-FORMYL-2-HYDROXYPROPYL]-4-METHYL-4,5-DIHYDRO-1H-PYRROLE-2-CARBOXYLIC+ACID'>1RG</scene></td></tr>
-==About this Structure==
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4gcs FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4gcs OCA], [https://pdbe.org/4gcs PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4gcs RCSB], [https://www.ebi.ac.uk/pdbsum/4gcs PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4gcs ProSAT]</span></td></tr>
-[[4gcs]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Escherichia_coli_k-12 Escherichia coli k-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4GCS OCA].
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/OMPF_ECOLI OMPF_ECOLI] Forms pores that allow passive diffusion of small molecules across the outer membrane. It is also a receptor for the bacteriophage T2.<ref>PMID:19721064</ref>
 ==See Also==
-*[[Porin|Porin]]
+*[[Porin 3D structures|Porin 3D structures]]
-[[Category: Escherichia coli k-12]]
+== References ==
-[[Category: Roux, B.]]
+<references/>
-[[Category: Ziervogel, B K.]]
+__TOC__
-[[Category: Beta-barrel]]
+</StructureSection>
-[[Category: Ertapenem binding]]
+[[Category: Escherichia coli K-12]]
-[[Category: Membrane protein-antibiotic complex]]
+[[Category: Large Structures]]
-[[Category: Non-specific channel]]
+[[Category: Roux B]]
-[[Category: Outer membrane]]
+[[Category: Ziervogel BK]]
-[[Category: Protein-drug complex]]
-[[Category: Trimer]]