4jd7: Difference between revisions

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New page: left|200px {{STRUCTURE_4jd7| PDB=4jd7 | SCENE= }} ===Crystal structure of pput_1285, a putative hydroxyproline epimerase from Pseudomonas putida f1 (target EFI-50...
 
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{{STRUCTURE_4jd7|  PDB=4jd7  |  SCENE=  }}
==Crystal structure of pput_1285, a putative hydroxyproline epimerase from Pseudomonas putida f1 (target EFI-506500), open form, space group P212121, bound sulfate==
 
<StructureSection load='4jd7' size='340' side='right'caption='[[4jd7]], [[Resolution|resolution]] 1.50&Aring;' scene=''>
===Crystal structure of pput_1285, a putative hydroxyproline epimerase from Pseudomonas putida f1 (target EFI-506500), open form, space group P212121, bound sulfate===
== Structural highlights ==
 
<table><tr><td colspan='2'>[[4jd7]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_putida_F1 Pseudomonas putida F1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JD7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4JD7 FirstGlance]. <br>
 
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5&#8491;</td></tr>
==About this Structure==
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[4jd7]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Pseudomonas_putida_f1 Pseudomonas putida f1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4JD7 OCA].  
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4jd7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4jd7 OCA], [https://pdbe.org/4jd7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4jd7 RCSB], [https://www.ebi.ac.uk/pdbsum/4jd7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4jd7 ProSAT]</span></td></tr>
[[Category: Pseudomonas putida f1]]
</table>
[[Category: Almo, S C.]]
== Function ==
[[Category: Bhosle, R.]]
[https://www.uniprot.org/uniprot/4HYPE_PSEP1 4HYPE_PSEP1] Catalyzes the epimerization of trans-4-hydroxy-L-proline (t4LHyp) to cis-4-hydroxy-D-proline (c4DHyp). Is likely involved in a degradation pathway that converts t4LHyp to alpha-ketoglutarate. Can also catalyze the epimerization of trans-3-hydroxy-L-proline (t3LHyp) to cis-3-hydroxy-D-proline (c3DHyp), albeit with 200-fold lower efficiency.<ref>PMID:24980702</ref>
[[Category: Chowdhury, S.]]
== References ==
[[Category: EFI, Enzyme Function Initiative.]]
<references/>
[[Category: Evans, B.]]
__TOC__
[[Category: Gerlt, J A.]]
</StructureSection>
[[Category: Glenn, A Scott.]]
[[Category: Large Structures]]
[[Category: Hammonds, J.]]
[[Category: Pseudomonas putida F1]]
[[Category: Hillerich, B.]]
[[Category: Al Obaidi NF]]
[[Category: Imker, H J.]]
[[Category: Almo SC]]
[[Category: Love, J.]]
[[Category: Bhosle R]]
[[Category: Morisco, L L.]]
[[Category: Chowdhury S]]
[[Category: Obaidi, N F.Al.]]
[[Category: Evans B]]
[[Category: Seidel, R D.]]
[[Category: Gerlt JA]]
[[Category: Sojitra, S.]]
[[Category: Hammonds J]]
[[Category: Stead, M.]]
[[Category: Hillerich B]]
[[Category: Toro, R.]]
[[Category: Imker HJ]]
[[Category: Vetting, M W.]]
[[Category: Love J]]
[[Category: Washington, E.]]
[[Category: Morisco LL]]
[[Category: Wasserman, S R.]]
[[Category: Scott Glenn A]]
[[Category: Efi]]
[[Category: Seidel RD]]
[[Category: Enzyme function initiative]]
[[Category: Sojitra S]]
[[Category: Isomerase]]
[[Category: Stead M]]
[[Category: Putative hydroxyproline epimerase]]
[[Category: Toro R]]
[[Category: Structural genomic]]
[[Category: Vetting MW]]
[[Category: Washington E]]
[[Category: Wasserman SR]]