2lnc: Difference between revisions
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== | ==Solution NMR structure of Norwalk virus protease== | ||
[[http://www.uniprot.org/uniprot/POLG_NVN68 POLG_NVN68 | <StructureSection load='2lnc' size='340' side='right'caption='[[2lnc]]' scene=''> | ||
== Structural highlights == | |||
<table><tr><td colspan='2'>[[2lnc]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Norovirus_Hu/1968/US Norovirus Hu/1968/US]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2LNC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2LNC FirstGlance]. <br> | |||
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> | |||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2lnc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2lnc OCA], [https://pdbe.org/2lnc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2lnc RCSB], [https://www.ebi.ac.uk/pdbsum/2lnc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2lnc ProSAT]</span></td></tr> | |||
</table> | |||
== Function == | |||
[https://www.uniprot.org/uniprot/POLG_NVN68 POLG_NVN68] Protein p48 may play a role in viral replication by interacting with host VAPA, a vesicle-associated membrane protein that plays a role in SNARE-mediated vesicle fusion. This interaction may target replication complex to intracellular membranes.<ref>PMID:569187</ref> <ref>PMID:11160659</ref> NTPase presumably plays a role in replication. Despite having similarities with helicases, does not seem to display any helicase activity.<ref>PMID:569187</ref> <ref>PMID:11160659</ref> Protein P22 may play a role in targeting replication complex to intracellular membranes.<ref>PMID:569187</ref> <ref>PMID:11160659</ref> Viral genome-linked protein is covalently linked to the 5'-end of the positive-strand, negative-strand genomic RNAs and subgenomic RNA. Acts as a genome-linked replication primer. May recruit ribosome to viral RNA thereby promoting viral proteins translation.<ref>PMID:569187</ref> <ref>PMID:11160659</ref> 3C-like protease processes the polyprotein: 3CLpro-RdRp is first released by autocleavage, then all other proteins are cleaved. May cleave host polyadenylate-binding protein thereby inhibiting cellular translation (By similarity).<ref>PMID:569187</ref> <ref>PMID:11160659</ref> RNA-directed RNA polymerase replicates genomic and antigenomic RNA by recognizing replications specific signals. Transcribes also a subgenomic mRNA by initiating RNA synthesis internally on antigenomic RNA. This sgRNA encodes for structural proteins. Catalyzes the covalent attachment VPg with viral RNAs (By similarity).<ref>PMID:569187</ref> <ref>PMID:11160659</ref> | |||
== | ==See Also== | ||
[[ | *[[Virus protease 3D structures|Virus protease 3D structures]] | ||
== References == | |||
== | <references/> | ||
<references | __TOC__ | ||
[[Category: | </StructureSection> | ||
[[Category: Norovirus | [[Category: Large Structures]] | ||
[[Category: Anbanandam | [[Category: Norovirus Hu/1968/US]] | ||
[[Category: Chang | [[Category: Anbanandam A]] | ||
[[Category: Hiromasa | [[Category: Chang K]] | ||
[[Category: Kim | [[Category: Hiromasa Y]] | ||
[[Category: Prakash | [[Category: Kim Y]] | ||
[[Category: Takahashi | [[Category: Prakash O]] | ||
[[Category: Takahashi D]] | |||
Latest revision as of 06:56, 1 May 2024
Solution NMR structure of Norwalk virus protease
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