2dou: Difference between revisions

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[[Image:2dou.gif|left|200px]]<br /><applet load="2dou" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2dou, resolution 2.30&Aring;" />
'''probable N-succinyldiaminopimelate aminotransferase (TTHA0342) from Thermus thermophilus HB8'''<br />


==About this Structure==
==probable N-succinyldiaminopimelate aminotransferase (TTHA0342) from Thermus thermophilus HB8==
2DOU is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus] with <scene name='pdbligand=SO4:'>SO4</scene> and <scene name='pdbligand=EPE:'>EPE</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DOU OCA].  
<StructureSection load='2dou' size='340' side='right'caption='[[2dou]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
[[Category: Thermus thermophilus]]
<table><tr><td colspan='2'>[[2dou]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus_HB8 Thermus thermophilus HB8]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2DOU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2DOU FirstGlance]. <br>
[[Category: Goto, M.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
[[Category: Hirotsu, K.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
[[Category: Miyahara, I.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2dou FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2dou OCA], [https://pdbe.org/2dou PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2dou RCSB], [https://www.ebi.ac.uk/pdbsum/2dou PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2dou ProSAT], [https://www.topsan.org/Proteins/RSGI/2dou TOPSAN]</span></td></tr>
[[Category: Omi, R.]]
</table>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
== Function ==
[[Category: EPE]]
[https://www.uniprot.org/uniprot/Q5SLF1_THET8 Q5SLF1_THET8]  
[[Category: SO4]]
== Evolutionary Conservation ==
[[Category: national project on protein structural and functional analyses]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: nppsfa]]
Check<jmol>
[[Category: plp-dependent enzyme]]
  <jmolCheckbox>
[[Category: riken structural genomics/proteomics initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/do/2dou_consurf.spt"</scriptWhenChecked>
[[Category: rsgi]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: structural genomics]]
    <text>to colour the structure by Evolutionary Conservation</text>
 
  </jmolCheckbox>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:01:02 2008''
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2dou ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Thermus thermophilus HB8]]
[[Category: Goto M]]
[[Category: Hirotsu K]]
[[Category: Miyahara I]]
[[Category: Omi R]]
Retrieved from "https://proteopedia.org/2dou"