2egz: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,332,843 edits
No edit summary
 
(13 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2egz.jpg|left|200px]]<br /><applet load="2egz" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2egz, resolution 1.75&Aring;" />
'''Crystal structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5'''<br />


==About this Structure==
==Crystal structure of the 3-dehydroquinate dehydratase from Aquifex aeolicus VF5==
2EGZ is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus] with <scene name='pdbligand=TLA:'>TLA</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Active as [http://en.wikipedia.org/wiki/3-dehydroquinate_dehydratase 3-dehydroquinate dehydratase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.1.10 4.2.1.10] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EGZ OCA].  
<StructureSection load='2egz' size='340' side='right'caption='[[2egz]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
[[Category: 3-dehydroquinate dehydratase]]
== Structural highlights ==
<table><tr><td colspan='2'>[[2egz]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EGZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EGZ FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=TLA:L(+)-TARTARIC+ACID'>TLA</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2egz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2egz OCA], [https://pdbe.org/2egz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2egz RCSB], [https://www.ebi.ac.uk/pdbsum/2egz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2egz ProSAT], [https://www.topsan.org/Proteins/RSGI/2egz TOPSAN]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/AROD_AQUAE AROD_AQUAE]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eg/2egz_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2egz ConSurf].
<div style="clear:both"></div>
 
==See Also==
*[[Dehydroquinase 3D structures|Dehydroquinase 3D structures]]
__TOC__
</StructureSection>
[[Category: Aquifex aeolicus]]
[[Category: Aquifex aeolicus]]
[[Category: Single protein]]
[[Category: Large Structures]]
[[Category: Ebihara, A.]]
[[Category: Ebihara A]]
[[Category: Karthe, P.]]
[[Category: Karthe P]]
[[Category: Kumarevel, T S.]]
[[Category: Kumarevel TS]]
[[Category: Kuramitsu, S.]]
[[Category: Kuramitsu S]]
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[[Category: Yokoyama S]]
[[Category: Yokoyama, S.]]
[[Category: TLA]]
[[Category: aquifex aeolicus vf5]]
[[Category: lyase]]
[[Category: national project on protein structural and functional analyses]]
[[Category: nppsfa]]
[[Category: riken structural genomics/proteomics initiative]]
[[Category: rsgi]]
[[Category: structural genomics]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:09:56 2008''
Retrieved from "https://proteopedia.org/2egz"