Single-stranded DNA-binding protein: Difference between revisions

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New page: left|200px|thumb|Crystal structure of SSB complex with ssDNA [[1eeq]] {{STRUCTURE_1eeq| PDB=1eeq | SIZE=350| SCENE= |right|CAPTION=SSB complex with ssDNA 1eeq...
 
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[[Image:1eeq.png|left|200px|thumb|Crystal structure of SSB complex with ssDNA [[1eeq]]]]
{{STRUCTURE_1eeq|  PDB=1eeq  | SIZE=350| SCENE= |right|CAPTION=SSB complex with ssDNA [[1eeq]] }}


<StructureSection load='1eqq' size='350' side='right' scene='' caption='E. coli SSB complex with ssDNA (stick model) and UMP [[1eqq]]'>
'''Single-stranded DNA-binding protein''' (SSB) binds to single-stranded regions of DNA (ssDNA) to protect it from annealing, prevention of secondary structure formation and digestion.  SSB binds to DNA in a sequence-independent manner.  The binding of SSB enables processes like replication, DNA repair and recombination to occur.  SSB can form complexes with specific genome maintenance proteins helping their activities<ref>PMID:22976174</ref>.<br />
*  '''Viral SSB proteins''' are monomeric.<br />
*    '''Eukaryotic SSB''' ('''Replication protein A''' – RPA) is a heterotrimer composed of RPA70, RPA32 and RPA14.  RPA has 6 DNA-binding domains (DBD).<br />
*'''Replication protein A70''' is the eukaryotic SSB 70kDa subunit<ref>PMID:11470540</ref>.
*  '''Mitochondrial human SSB (HsmtSSB)''' is a homotetramer.


 
See also [[Single stranded binding protein]].
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
'''Single-stranded DNA-binding protein''' (SSB) binds to single-stranded regions of DNA (ssDNA) to protect it from annealing, prevention of secondary structure formation and digestion.  SSB binds to DNA in a sequence-independent manner.  The binding of SSB enables processes like replication, DNA repair and recombination to occur.  SSB can form complexes with specific genome maintenance proteins helping their activities.
 
== 3D Structures of single-stranded DNA-binding protein ==
== 3D Structures of single-stranded DNA-binding protein ==
[[Single-stranded DNA-binding protein 3D structures]]


Updated on {{REVISIONDAY2}}-{{MONTHNAME|{{REVISIONMONTH}}}}-{{REVISIONYEAR}}
</StructureSection>
 
[[1gpc]] – SSB gp32 – Enterobacteria phage T4 <br />
[[2a1k]] – SSB gp32 – Enterobacteria phage RB69 <br />
[[1je5]] – SSB – Enterobacteria phage T7 <br />
[[1adu]], [[1adv]], [[1anv]] – SSB C terminal – human adenovirus 5 <br />
[[1urj]] – SSB – human herpesvirus 1 <br />
[[1pfs]] – SSB (mutant) – Pseudomonas phage PF3 - NMR<br />
[[3ull]], [[1s3o]], [[2dud]] – SSB – human <br />
[[1kaw]] – EcSSB chymotryptic domain – ''Escherichia coli'' <br />
[[1qvc]], [[1sru]] – EcSSB  <br />
[[1o7i]] – SSB residues 1-119 – ''Sulfolobus solfataricus''<br />
[[1ue1]], [[1ue5]], [[1ue7]] – SSB – ''Mycobacterium tuberculosis'' <br />
[[1x3e]], [[1x3f]], [[1x3g]] – MsSSB – ''Mycobacterium smegmatis'' <br />
[[1se8]] – DrSSB – ''Deinococcus radiodurans'' <br />
[[4exw]] – SSB DdrB – ''Deinococcus geothermalis'' <br />
[[1z9f]] – SSB – ''Thermotoga maritima'' <br />
[[2cwa]] – SSB – ''Thermus thermophilus'' <br />
[[2fxq]], [[2ihe]] – TaSSB – ''Thermus aquaticus'' <br />
[[2ihf]] – TaSSB (mutant) <br />
[[2hql]] – SSB – ''Mycoplasma pneumoniae'' <br />
[[3eiv]] – ScSSB – ''Streptomyces coelicolor''<br />
[[4dam]] – ScSSB (mutant) <br />
[[3lgj]], [[3pgz]] – SSB – ''Bartonella henselae'' <br />
[[3afp]], [[3afq]] – SSB – ''Mycobacterium leprae'' <br />
[[3tqy]] – SSB – ''Coxiella burnetii'' <br />
[[3tek]] – SSB N terminal – ''Thermoproteus tenax''<br />
[[4gs3]] – SSB N terminal – ''Thermoanaerobacter tengcongensis''<br />
 
===SSB complex with ssDNA===


[[1eyg]] – EcSSB chymotryptic domain + ssDNA <br />
== References ==
[[1eqq]] – EcSSB + ssDNA <br />
<references/>
[[2vw9]] – HpSSB + ssDNA <br />
[[Category:Topic Page]]
[[3vdy]] – SSB + ssDNA – ''Bacillus subtilis''<br />
[[3a5u]] – MsSSB chymotryptic domain + ssDNA <br />
[[3udg]] – DrSSB + ssDNA <br />

Latest revision as of 08:08, 13 August 2024


E. coli SSB complex with ssDNA (stick model) and UMP 1eqq

Drag the structure with the mouse to rotate

References

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel, Alexander Berchansky