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[[Image:2eqa.jpg|left|200px]]<br /><applet load="2eqa" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2eqa, resolution 1.80&Aring;" />
'''Crystal Structure of the hypothetical Sua5 protein from Sulfolobus tokodaii'''<br />


==About this Structure==
==Crystal Structure of the hypothetical Sua5 protein from Sulfolobus tokodaii==
2EQA is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Sulfolobus_tokodaii Sulfolobus tokodaii] with <scene name='pdbligand=MG:'>MG</scene> and <scene name='pdbligand=AMP:'>AMP</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EQA OCA].  
<StructureSection load='2eqa' size='340' side='right'caption='[[2eqa]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
 
== Structural highlights ==
==Reference==
<table><tr><td colspan='2'>[[2eqa]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfurisphaera_tokodaii Sulfurisphaera tokodaii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2EQA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2EQA FirstGlance]. <br>
X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7., Agari Y, Sato S, Wakamatsu T, Bessho Y, Ebihara A, Yokoyama S, Kuramitsu S, Shinkai A, Proteins. 2008 Feb 15;70(3):1108-11. PMID:[http://ispc.weizmann.ac.il//pmbin/getpm?pmid=18004774 18004774]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.8&#8491;</td></tr>
[[Category: Single protein]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Sulfolobus tokodaii]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2eqa FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2eqa OCA], [https://pdbe.org/2eqa PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2eqa RCSB], [https://www.ebi.ac.uk/pdbsum/2eqa PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2eqa ProSAT], [https://www.topsan.org/Proteins/RSGI/2eqa TOPSAN]</span></td></tr>
[[Category: Agari, Y.]]
</table>
[[Category: Kuramitsu, S.]]
== Function ==
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
[https://www.uniprot.org/uniprot/SUA5_SULTO SUA5_SULTO] Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine (By similarity). Probably catalyzes the conversion of L-threonine, bicarbonate/CO(2) and ATP to give threonylcarbamoyl-AMP (TC-AMP) as the acyladenylate intermediate, with the release of pyrophosphate. Shows ATP hydrolysis activity in vitro, producing AMP.<ref>PMID:22383337</ref>
[[Category: Shinkai, A.]]
== Evolutionary Conservation ==
[[Category: Yokoyama, S.]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: AMP]]
Check<jmol>
[[Category: MG]]
  <jmolCheckbox>
[[Category: national project on protein structural and functional analyses]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/eq/2eqa_consurf.spt"</scriptWhenChecked>
[[Category: nppsfa]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: riken structural genomics/proteomics initiative]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: rna binding protein]]
  </jmolCheckbox>
[[Category: rsgi]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2eqa ConSurf].
[[Category: structural genomics]]
<div style="clear:both"></div>
[[Category: sua5 domain]]
== References ==
[[Category: yrdc domain]]
<references/>
[[Category: yrdc/ribb fold]]
__TOC__
 
</StructureSection>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:13:34 2008''
[[Category: Large Structures]]
[[Category: Sulfurisphaera tokodaii]]
[[Category: Agari Y]]
[[Category: Kuramitsu S]]
[[Category: Shinkai A]]
[[Category: Yokoyama S]]

Latest revision as of 00:53, 21 November 2024

Crystal Structure of the hypothetical Sua5 protein from Sulfolobus tokodaii

2eqa, resolution 1.80Å

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