3n2i: Difference between revisions

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{{STRUCTURE_3n2i|  PDB=3n2i  |  SCENE=  }}
===2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine===


==Function==
==2.25 Angstrom resolution crystal structure of a thymidylate kinase (tmk) from Vibrio cholerae O1 biovar eltor str. N16961 in complex with thymidine==
[[http://www.uniprot.org/uniprot/KTHY_VIBCH KTHY_VIBCH]] Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity).  
<StructureSection load='3n2i' size='340' side='right'caption='[[3n2i]], [[Resolution|resolution]] 2.25&Aring;' scene=''>
== Structural highlights ==
<table><tr><td colspan='2'>[[3n2i]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 Vibrio cholerae O1 biovar El Tor str. N16961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3N2I FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=THM:THYMIDINE'>THM</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3n2i FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3n2i OCA], [https://pdbe.org/3n2i PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3n2i RCSB], [https://www.ebi.ac.uk/pdbsum/3n2i PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3n2i ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/KTHY_VIBCH KTHY_VIBCH] Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis (By similarity).
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/n2/3n2i_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3n2i ConSurf].
<div style="clear:both"></div>


==About this Structure==
==See Also==
[[3n2i]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Vibrio_cholerae_o1_biovar_el_tor Vibrio cholerae o1 biovar el tor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3N2I OCA].
*[[Thymidylate kinase 3D structures|Thymidylate kinase 3D structures]]
[[Category: Vibrio cholerae o1 biovar el tor]]
__TOC__
[[Category: DTMP kinase]]
</StructureSection>
[[Category: Anderson, W F.]]
[[Category: Large Structures]]
[[Category: CSGID, Center for Structural Genomics of Infectious Diseases.]]
[[Category: Vibrio cholerae O1 biovar El Tor str. N16961]]
[[Category: Dubrovska, I.]]
[[Category: Anderson WF]]
[[Category: Halavaty, A S.]]
[[Category: Dubrovska I]]
[[Category: Minasov, G.]]
[[Category: Halavaty AS]]
[[Category: Peterson, S.]]
[[Category: Minasov G]]
[[Category: Shuvalova, L.]]
[[Category: Peterson S]]
[[Category: Winsor, J.]]
[[Category: Shuvalova L]]
[[Category: Atp-binding]]
[[Category: Winsor J]]
[[Category: Center for structural genomics of infectious disease]]
[[Category: Csgid]]
[[Category: Infectious disease]]
[[Category: Kinase]]
[[Category: Nucleotide biosynthesis]]
[[Category: Nucleotide-binding]]
[[Category: Structural genomic]]
[[Category: Thymidylate kinase]]
[[Category: Transferase]]
[[Category: Vibrio cholerae]]
Retrieved from "https://proteopedia.org/3n2i"