2gff: Difference between revisions

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[[Image:2gff.jpg|left|200px]]<br /><applet load="2gff" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2gff, resolution 1.75&Aring;" />
'''Crystal Structure of Yersinia pestis LsrG'''<br />


==About this Structure==
==Crystal Structure of Yersinia pestis LsrG==
2GFF is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis] with <scene name='pdbligand=CL:'>CL</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFF OCA].  
<StructureSection load='2gff' size='340' side='right'caption='[[2gff]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
[[Category: Single protein]]
== Structural highlights ==
<table><tr><td colspan='2'>[[2gff]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Yersinia_pestis Yersinia pestis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2GFF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2GFF FirstGlance]. <br>
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2gff FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2gff OCA], [https://pdbe.org/2gff PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2gff RCSB], [https://www.ebi.ac.uk/pdbsum/2gff PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2gff ProSAT]</span></td></tr>
</table>
== Function ==
[https://www.uniprot.org/uniprot/LSRG_YERPE LSRG_YERPE] Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the conversion of (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione (P-DPD) to 3-hydroxy-5-phosphonooxypentane-2,4-dione (P-HPD).[HAMAP-Rule:MF_02051]
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
  <jmolCheckbox>
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gf/2gff_consurf.spt"</scriptWhenChecked>
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
    <text>to colour the structure by Evolutionary Conservation</text>
  </jmolCheckbox>
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2gff ConSurf].
<div style="clear:both"></div>
__TOC__
</StructureSection>
[[Category: Large Structures]]
[[Category: Yersinia pestis]]
[[Category: Yersinia pestis]]
[[Category: Carvalho-Kavanagh, M de.]]
[[Category: Chain P]]
[[Category: Chain, P.]]
[[Category: Garcia E]]
[[Category: Garcia, E.]]
[[Category: Lao V]]
[[Category: Lao, V.]]
[[Category: Lekin T]]
[[Category: Lekin, T.]]
[[Category: Motin V]]
[[Category: Motin, V.]]
[[Category: Schafer J]]
[[Category: Schafer, J.]]
[[Category: Segelke B]]
[[Category: Segelke, B.]]
[[Category: Toppani D]]
[[Category: Toppani, D.]]
[[Category: De Carvalho-Kavanagh M]]
[[Category: CL]]
[[Category: dimeric alpha+beta barrel ferredoxin fold]]
 
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 17:31:07 2008''
Retrieved from "https://proteopedia.org/2gff"