Sandbox Reserved 14: Difference between revisions

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<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->
<!-- INSERT YOUR SCENES AND TEXT BELOW THIS LINE -->


<Structure load='1d5r' size='450' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />
<Structure load='1d66' size='350' frame='true' align='right' caption='Insert caption here' scene='Insert optional scene name here' />


<Div Align="center">
This is the DNA-binding domain of the gal4 transcriptional regulatory protein, bound to DNA.
<br><br>
*<scene name='42/421644/Osaka1/1'>Here the DNA is solid</scene>
<b><br>
(atoms have van der Waals radii).
PDB code:1D5R
*The DNA-binding surface of the protein has <scene name='42/421644/Osaka1/2'>only positive charges</scene> to bind to the negatively charged DNA phosphate backbone.
<br>
(<font color="blue">Positive</font>,
MENU</b>
<font color="red">Negative</font>)
<br>
1.Show <scene name='Sandbox_Reserved_14/1d5r-chaeged2/4'>N(BLUE) -> C(RED) rainbow</scene>
<br><br>
2.Show <scene name='Sandbox_Reserved_14/1d5r-evocon/1'>evolutionary conservation</scene>
<br>
highly conserved(Burgandy color) ------> lowly conserved(Light blue)
</Div>
 
<br><br><br><br><br><br><br><br><br><br><br>
<br><br><br><br><br><br><br><br><br><br><br>
 
<Structure load='4gel' size='450' frame='true' align='left' caption='Insert caption here' scene='Insert optional scene name here' />
<br><br><br>
<Div Alighn="center">
<b>
PDB code:4GEL<br>
MENU</b>
<br>
1.Show <scene name='Sandbox_Reserved_14/4gel_temp/2'> Coloured according to theier relative temprerature foctor</scene>
<br>
Lower is Blue.Higher is Red.
<br><br>
2.Show <scene name='Sandbox_Reserved_14/4gel_hydro/1'>Hydrophobic and Polar</scene>
Hydrophobic amino acid is glay ball.<br>
Polar amino acid is pink ball.
</Div>

Latest revision as of 07:14, 15 May 2014

This Sandbox is Reserved from May 10, 2015, through July 31, 2015 for use by the class Protein 3D Structure Visualization & Structural Bioinformatics taught by Eric Martz and Keiichi Namba at Osaka University, Japan. This reservation includes Sandbox Reserved 1 through Sandbox Reserved 10. Syllabus.
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Insert caption here

Drag the structure with the mouse to rotate

This is the DNA-binding domain of the gal4 transcriptional regulatory protein, bound to DNA.

(atoms have van der Waals radii).

  • The DNA-binding surface of the protein has only positive charges to bind to the negatively charged DNA phosphate backbone.

(Positive, Negative)

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