4iye: Difference between revisions

Latest revision as of 15:33, 20 September 2023

Crystal structure of AdTx1 (rho-Da1a) from eastern green mamba (Dendroaspis angusticeps)

Structural highlights

4iye is a 1 chain structure with sequence from Dendroaspis angusticeps. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.951Å
Ligands:	EDO, PEG
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

3SI1A_DENAN Orthosteric antagonist of the alpha-1A adrenergic receptor (ADRA1A) with an affinity of 0.35 nM (PubMed:20015090). Has also affinity for ADRA1B > ADRA2C > ADRA1D (PubMed:23935897). Acts as a relaxant of smooth muscle. Reduces prostatic muscle tone as efficiently as tamsulosin (an antagonist presently used), but with fewer cardiovascular side effects (PubMed:23005263).^[1] ^[2] ^[3] ^[4]

Publication Abstract from PubMed

rho-Da1a toxin from eastern green mamba (Dendroaspis angusticeps) venom is a polypeptide of 65 amino acids with a strong affinity for the G-protein-coupled alpha(1A)-adrenoceptor. This neurotoxin has been crystallized from resolubilized lyophilized powder, but the best crystals grew spontaneously during lyophilization. The crystals belonged to the trigonal space group P3(1)21, with unit-cell parameters a = b = 37.37, c = 66.05 A, and diffracted to 1.95 A resolution. The structure solved by molecular replacement showed strong similarities to green mamba muscarinic toxins.

Crystallization of recombinant green mamba rho-Da1a toxin during a lyophilization procedure and its structure determination.,Maiga A, Vera L, Marchetti C, Lorphelin A, Bellanger L, Mourier G, Servent D, Gilles N, Stura EA Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):704-9. doi:, 10.1107/S1744309113011470. Epub 2013 May 29. PMID:23722859^[5]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Quinton L, Girard E, Maiga A, Rekik M, Lluel P, Masuyer G, Larregola M, Marquer C, Ciolek J, Magnin T, Wagner R, Molgo J, Thai R, Fruchart-Gaillard C, Mourier G, Chamot-Rooke J, Menez A, Palea S, Servent D, Gilles N. Isolation and pharmacological characterization of AdTx1, a natural peptide displaying specific insurmountable antagonism of the alpha1A-adrenoceptor. Br J Pharmacol. 2010 Jan 1;159(2):316-25. doi: 10.1111/j.1476-5381.2009.00532.x. , Epub 2009 Dec 15. PMID:20015090 doi:https://dx.doi.org/10.1111/j.1476-5381.2009.00532.x
↑ Maiga A, Mourier G, Quinton L, Rouget C, Gales C, Denis C, Lluel P, Senard JM, Palea S, Servent D, Gilles N. G protein-coupled receptors, an unexploited animal toxin targets: Exploration of green mamba venom for novel drug candidates active against adrenoceptors. Toxicon. 2012 Mar 15;59(4):487-96. doi: 10.1016/j.toxicon.2011.03.009. Epub 2011 , Mar 22. PMID:21419153 doi:https://dx.doi.org/10.1016/j.toxicon.2011.03.009
↑ Palea S, Maiga A, Guilloteau V, Rekik M, Guerard M, Rouget C, Rischmann P, Botto H, Camparo P, Lluel P, Gilles N. Effects of rho-Da1a a peptidic alpha(1) (A) -adrenoceptor antagonist in human isolated prostatic adenoma and anaesthetized rats. Br J Pharmacol. 2013 Feb;168(3):618-31. doi: 10.1111/j.1476-5381.2012.02231.x. PMID:23005263 doi:https://dx.doi.org/10.1111/j.1476-5381.2012.02231.x
↑ Maiga A, Merlin J, Marcon E, Rouget C, Larregola M, Gilquin B, Fruchart-Gaillard C, Lajeunesse E, Marchetti C, Lorphelin A, Bellanger L, Summers RJ, Hutchinson DS, Evans BA, Servent D, Gilles N. Orthosteric binding of rho-Da1a, a natural peptide of snake venom interacting selectively with the alpha1A-adrenoceptor. PLoS One. 2013 Jul 25;8(7):e68841. doi: 10.1371/journal.pone.0068841. Print 2013. PMID:23935897 doi:https://dx.doi.org/10.1371/journal.pone.0068841
↑ Maiga A, Vera L, Marchetti C, Lorphelin A, Bellanger L, Mourier G, Servent D, Gilles N, Stura EA. Crystallization of recombinant green mamba rho-Da1a toxin during a lyophilization procedure and its structure determination. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):704-9. doi:, 10.1107/S1744309113011470. Epub 2013 May 29. PMID:23722859 doi:10.1107/S1744309113011470

Proteopedia Page Contributors and Editors (what is this?)

OCA

[1] Quinton L, Girard E, Maiga A, Rekik M, Lluel P, Masuyer G, Larregola M, Marquer C, Ciolek J, Magnin T, Wagner R, Molgo J, Thai R, Fruchart-Gaillard C, Mourier G, Chamot-Rooke J, Menez A, Palea S, Servent D, Gilles N. Isolation and pharmacological characterization of AdTx1, a natural peptide displaying specific insurmountable antagonism of the alpha1A-adrenoceptor. Br J Pharmacol. 2010 Jan 1;159(2):316-25. doi: 10.1111/j.1476-5381.2009.00532.x. , Epub 2009 Dec 15. PMID:20015090 doi:https://dx.doi.org/10.1111/j.1476-5381.2009.00532.x

[2] Maiga A, Mourier G, Quinton L, Rouget C, Gales C, Denis C, Lluel P, Senard JM, Palea S, Servent D, Gilles N. G protein-coupled receptors, an unexploited animal toxin targets: Exploration of green mamba venom for novel drug candidates active against adrenoceptors. Toxicon. 2012 Mar 15;59(4):487-96. doi: 10.1016/j.toxicon.2011.03.009. Epub 2011 , Mar 22. PMID:21419153 doi:https://dx.doi.org/10.1016/j.toxicon.2011.03.009

[3] Palea S, Maiga A, Guilloteau V, Rekik M, Guerard M, Rouget C, Rischmann P, Botto H, Camparo P, Lluel P, Gilles N. Effects of rho-Da1a a peptidic alpha(1) (A) -adrenoceptor antagonist in human isolated prostatic adenoma and anaesthetized rats. Br J Pharmacol. 2013 Feb;168(3):618-31. doi: 10.1111/j.1476-5381.2012.02231.x. PMID:23005263 doi:https://dx.doi.org/10.1111/j.1476-5381.2012.02231.x

[4] Maiga A, Merlin J, Marcon E, Rouget C, Larregola M, Gilquin B, Fruchart-Gaillard C, Lajeunesse E, Marchetti C, Lorphelin A, Bellanger L, Summers RJ, Hutchinson DS, Evans BA, Servent D, Gilles N. Orthosteric binding of rho-Da1a, a natural peptide of snake venom interacting selectively with the alpha1A-adrenoceptor. PLoS One. 2013 Jul 25;8(7):e68841. doi: 10.1371/journal.pone.0068841. Print 2013. PMID:23935897 doi:https://dx.doi.org/10.1371/journal.pone.0068841

[5] Maiga A, Vera L, Marchetti C, Lorphelin A, Bellanger L, Mourier G, Servent D, Gilles N, Stura EA. Crystallization of recombinant green mamba rho-Da1a toxin during a lyophilization procedure and its structure determination. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):704-9. doi:, 10.1107/S1744309113011470. Epub 2013 May 29. PMID:23722859 doi:10.1107/S1744309113011470

[1]

[2]

[3]

[4]

[5]

@@ Line 1: / Line 1: @@
-{{STRUCTURE_4iye|  PDB=4iye  |  SCENE=  }}
-===Crystal structure of AdTx1 (rho-Da1a) from eastern green mamba (Dendroaspis angusticeps)===
-{{ABSTRACT_PUBMED_23722859}}
-==About this Structure==
+==Crystal structure of AdTx1 (rho-Da1a) from eastern green mamba (Dendroaspis angusticeps)==
-[[4iye]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Dendroaspis_angusticeps Dendroaspis angusticeps]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IYE OCA].
+<StructureSection load='4iye' size='340' side='right'caption='[[4iye]], [[Resolution|resolution]] 1.95&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4iye]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Dendroaspis_angusticeps Dendroaspis angusticeps]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IYE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IYE FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.951&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4iye FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4iye OCA], [https://pdbe.org/4iye PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4iye RCSB], [https://www.ebi.ac.uk/pdbsum/4iye PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4iye ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/3SI1A_DENAN 3SI1A_DENAN] Orthosteric antagonist of the alpha-1A adrenergic receptor (ADRA1A) with an affinity of 0.35 nM (PubMed:20015090). Has also affinity for ADRA1B > ADRA2C > ADRA1D (PubMed:23935897). Acts as a relaxant of smooth muscle. Reduces prostatic muscle tone as efficiently as tamsulosin (an antagonist presently used), but with fewer cardiovascular side effects (PubMed:23005263).<ref>PMID:20015090</ref> <ref>PMID:21419153</ref> <ref>PMID:23005263</ref> <ref>PMID:23935897</ref>
+<div style="background-color:#fffaf0;">
+== Publication Abstract from PubMed ==
+rho-Da1a toxin from eastern green mamba (Dendroaspis angusticeps) venom is a polypeptide of 65 amino acids with a strong affinity for the G-protein-coupled alpha(1A)-adrenoceptor. This neurotoxin has been crystallized from resolubilized lyophilized powder, but the best crystals grew spontaneously during lyophilization. The crystals belonged to the trigonal space group P3(1)21, with unit-cell parameters a = b = 37.37, c = 66.05 A, and diffracted to 1.95 A resolution. The structure solved by molecular replacement showed strong similarities to green mamba muscarinic toxins.
-==Reference==
+Crystallization of recombinant green mamba rho-Da1a toxin during a lyophilization procedure and its structure determination.,Maiga A, Vera L, Marchetti C, Lorphelin A, Bellanger L, Mourier G, Servent D, Gilles N, Stura EA Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Jun;69(Pt 6):704-9. doi:, 10.1107/S1744309113011470. Epub 2013 May 29. PMID:23722859<ref>PMID:23722859</ref>
-<ref group="xtra">PMID:023722859</ref><references group="xtra"/><references/>
+From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+</div>
+<div class="pdbe-citations 4iye" style="background-color:#fffaf0;"></div>
+== References ==
+<references/>
+__TOC__
+</StructureSection>
 [[Category: Dendroaspis angusticeps]]
-[[Category: Bellanger, L.]]
+[[Category: Large Structures]]
-[[Category: Gilles, N.]]
+[[Category: Bellanger L]]
-[[Category: Lorphelin, A.]]
+[[Category: Gilles N]]
-[[Category: Maiga, A A.]]
+[[Category: Lorphelin A]]
-[[Category: Marchetti, C.]]
+[[Category: Maiga AA]]
-[[Category: Servant, D.]]
+[[Category: Marchetti C]]
-[[Category: Stura, E A.]]
+[[Category: Servant D]]
-[[Category: Vera, L.]]
+[[Category: Stura EA]]
-[[Category: Acts as a relaxant of smooth muscle]]
+[[Category: Vera L]]
-[[Category: Alpha-1a adrenergic receptor]]
-[[Category: Expressed by the venom gland]]
-[[Category: G-rhoda1a k34a]]
-[[Category: Snake three-finger toxin family]]
-[[Category: Toxin]]
-[[Category: Type a muscarinic toxin subfamily]]

4iye: Difference between revisions

Latest revision as of 15:33, 20 September 2023

Crystal structure of AdTx1 (rho-Da1a) from eastern green mamba (Dendroaspis angusticeps)

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

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