4khw: Difference between revisions

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~~{{STRUCTURE_4khw| PDB=4khw | SCENE= }}~~

~~===Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position===~~

==~~Function~~==

==Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position==

[[http://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69]] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.

== Structural highlights ==

<table><tr><td colspan='2'>[[4khw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_RB69 Escherichia phage RB69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KHW OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=4KHW FirstGlance].

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.371Å</td></tr>

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TTP:THYMIDINE-5-TRIPHOSPHATE'>TTP</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=4khw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4khw OCA], [https://pdbe.org/4khw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4khw RCSB], [https://www.ebi.ac.uk/pdbsum/4khw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4khw ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.

==~~About this Structure~~==

==See Also==

[[4khw]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_rb69 Enterobacteria phage rb69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KHW OCA].

*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]

~~[[Category:~~ DNA~~-directed~~ DNA polymerase]]

__TOC__

[[Category: ~~Enterobacteria~~ phage ~~rb69~~]]

</StructureSection>

[[Category: ~~Clausen, A R.~~]]

[[Category: Escherichia phage RB69]]

[[Category: ~~Pedersen, L C.~~]]

[[Category: Large Structures]]

[[Category: ~~Ribonucleotide]]~~

[[Category: Clausen AR]]

~~[[Category: Transferase-dna complex~~]]

[[Category: Pedersen LC]]

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@@ Line 1: / Line 1: @@
-{{STRUCTURE_4khw|  PDB=4khw  |  SCENE=  }}
-===Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position===
-==Function==
+==Ternary complex of RB69 mutant L415F with ribonucleotide at -2 position==
-[[http://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69]] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
+<StructureSection load='4khw' size='340' side='right'caption='[[4khw]], [[Resolution|resolution]] 2.37&Aring;' scene=''>
+== Structural highlights ==
+<table><tr><td colspan='2'>[[4khw]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_phage_RB69 Escherichia phage RB69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KHW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4KHW FirstGlance]. <br>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.371&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=TTP:THYMIDINE-5-TRIPHOSPHATE'>TTP</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4khw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4khw OCA], [https://pdbe.org/4khw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4khw RCSB], [https://www.ebi.ac.uk/pdbsum/4khw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4khw ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/DPOL_BPR69 DPOL_BPR69] This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.
-==About this Structure==
+==See Also==
-[[4khw]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Enterobacteria_phage_rb69 Enterobacteria phage rb69]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4KHW OCA].
+*[[DNA polymerase 3D structures|DNA polymerase 3D structures]]
-[[Category: DNA-directed DNA polymerase]]
+__TOC__
-[[Category: Enterobacteria phage rb69]]
+</StructureSection>
-[[Category: Clausen, A R.]]
+[[Category: Escherichia phage RB69]]
-[[Category: Pedersen, L C.]]
+[[Category: Large Structures]]
-[[Category: Ribonucleotide]]
+[[Category: Clausen AR]]
-[[Category: Transferase-dna complex]]
+[[Category: Pedersen LC]]