3wo0: Difference between revisions

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~~'''Unreleased structure'''~~

~~The entry 3wo0 is ON HOLD~~

==Crystal structure of Bacillus subtilis YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala==

~~Authors: Tsuda, T., Kojima, S.~~

== Structural highlights ==

<table><tr><td colspan='2'>[[3wo0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WO0 OCA]. For a guided tour on the structure components use [https://proteopedia.org/fgij/fg.htm?mol=3WO0 FirstGlance].

~~Description:~~ Crystal structure of Bacillus subtilis YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala

</td></tr><tr id='method'><td class="sblockLbl">[[Empirical_models|Method:]]</td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr>

<tr id='ligand'><td class="sblockLbl">[[Ligand|Ligands:]]</td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>

<tr id='resources'><td class="sblockLbl">Resources:</td><td class="sblockDat">[https://proteopedia.org/fgij/fg.htm?mol=3wo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wo0 OCA], [https://pdbe.org/3wo0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wo0 RCSB], [https://www.ebi.ac.uk/pdbsum/3wo0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wo0 ProSAT]</td></tr>

</table>

== Function ==

[https://www.uniprot.org/uniprot/BACD_BACSU BACD_BACSU] Catalyzes the formation of alpha-dipeptides from various L-amino acids in the presence of ATP. Has a broad substrate specificity. Does not accept lysine, arginine, glutamate, aspartate and proline as a substrate. Probably catalyzes the ligation of L-alanine and L-anticapsin to produce the final bacilysin antibiotic.

__TOC__

</StructureSection>

[[Category: Bacillus subtilis subsp. subtilis str. 168]]

[[Category: Large Structures]]

[[Category: Kojima S]]

[[Category: Tsuda T]]

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@@ Line 1: / Line 1: @@
-'''Unreleased structure'''
-The entry 3wo0 is ON HOLD
+==Crystal structure of Bacillus subtilis YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala==
+<StructureSection load='3wo0' size='340' side='right'caption='[[3wo0]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
-Authors: Tsuda, T., Kojima, S.
+== Structural highlights ==
+<table><tr><td colspan='2'>[[3wo0]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WO0 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WO0 FirstGlance]. <br>
-Description: Crystal structure of Bacillus subtilis YwfE, an L-amino acid ligase, with bound ADP-Mg-Ala
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADP:ADENOSINE-5-DIPHOSPHATE'>ADP</scene>, <scene name='pdbligand=ALA:ALANINE'>ALA</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wo0 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wo0 OCA], [https://pdbe.org/3wo0 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wo0 RCSB], [https://www.ebi.ac.uk/pdbsum/3wo0 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wo0 ProSAT]</span></td></tr>
+</table>
+== Function ==
+[https://www.uniprot.org/uniprot/BACD_BACSU BACD_BACSU] Catalyzes the formation of alpha-dipeptides from various L-amino acids in the presence of ATP. Has a broad substrate specificity. Does not accept lysine, arginine, glutamate, aspartate and proline as a substrate. Probably catalyzes the ligation of L-alanine and L-anticapsin to produce the final bacilysin antibiotic.
+__TOC__
+</StructureSection>
+[[Category: Bacillus subtilis subsp. subtilis str. 168]]
+[[Category: Large Structures]]
+[[Category: Kojima S]]
+[[Category: Tsuda T]]