2yvw: Difference between revisions

From Proteopedia
Jump to navigationJump to search
← Older edit
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,330,058 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:2yvw.gif|left|200px]]<br /><applet load="2yvw" size="350" color="white" frame="true" align="right" spinBox="true"
caption="2yvw, resolution 1.81&Aring;" />
'''Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Aquifex aeolicus VF5'''<br />


==About this Structure==
==Crystal structure of UDP-N-acetylglucosamine 1-carboxyvinyltransferase from Aquifex aeolicus VF5==
2YVW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Aquifex_aeolicus Aquifex aeolicus] with <scene name='pdbligand=PO4:'>PO4</scene> and <scene name='pdbligand=EPU:'>EPU</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Active as [http://en.wikipedia.org/wiki/UDP-N-acetylglucosamine_1-carboxyvinyltransferase UDP-N-acetylglucosamine 1-carboxyvinyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.7 2.5.1.7] Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YVW OCA].
<StructureSection load='2yvw' size='340' side='right'caption='[[2yvw]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
[[Category: Aquifex aeolicus]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[2yvw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aquifex_aeolicus_VF5 Aquifex aeolicus VF5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2YVW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2YVW FirstGlance]. <br>
[[Category: UDP-N-acetylglucosamine 1-carboxyvinyltransferase]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
[[Category: Kitamuta, Y.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EPU:URIDINE-DIPHOSPHATE-2(N-ACETYLGLUCOSAMINYL)+BUTYRIC+ACID'>EPU</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
[[Category: Kuramitsu, S.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2yvw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2yvw OCA], [https://pdbe.org/2yvw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2yvw RCSB], [https://www.ebi.ac.uk/pdbsum/2yvw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2yvw ProSAT], [https://www.topsan.org/Proteins/RSGI/2yvw TOPSAN]</span></td></tr>
[[Category: RSGI, RIKEN Structural Genomics/Proteomics Initiative.]]
</table>
[[Category: Yokoyama, S.]]
== Function ==
[[Category: EPU]]
[https://www.uniprot.org/uniprot/MURA_AQUAE MURA_AQUAE] Cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine (By similarity).
[[Category: PO4]]
== Evolutionary Conservation ==
[[Category: national project on protein structural and functional analyses]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: nppsfa]]
Check<jmol>
[[Category: peptidoglycan]]
  <jmolCheckbox>
[[Category: riken structural genomics/proteomics initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/yv/2yvw_consurf.spt"</scriptWhenChecked>
[[Category: rsgi]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: structural genomics]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: transferase]]
  </jmolCheckbox>
[[Category: udp-n-acetylglucosamine]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2yvw ConSurf].
<div style="clear:both"></div>


''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 18:58:15 2008''
==See Also==
*[[Enoylpyruvate transferase 3D structures|Enoylpyruvate transferase 3D structures]]
__TOC__
</StructureSection>
[[Category: Aquifex aeolicus VF5]]
[[Category: Large Structures]]
[[Category: Kitamuta Y]]
[[Category: Kuramitsu S]]
[[Category: Yokoyama S]]
Retrieved from "https://proteopedia.org/2yvw"