3brc: Difference between revisions

From Proteopedia
Jump to navigationJump to search
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
New page: left|200px<br /><applet load="3brc" size="350" color="white" frame="true" align="right" spinBox="true" caption="3brc, resolution 1.60Å" /> '''Crystal structure of...
 
OCA (talk | contribs)
Bots, Bureaucrats, journal, Administrators
3,328,572 edits
No edit summary
 
(12 intermediate revisions by the same user not shown)
Line 1: Line 1:
[[Image:3brc.jpg|left|200px]]<br /><applet load="3brc" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3brc, resolution 1.60&Aring;" />
'''Crystal structure of a conserved protein of unknown function from Methanobacterium thermoautotrophicum'''<br />


==About this Structure==
==Crystal structure of a conserved protein of unknown function from Methanobacterium thermoautotrophicum==
3BRC is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus_str._delta_h Methanothermobacter thermautotrophicus str. delta h] with <scene name='pdbligand=PO4:'>PO4</scene> as [http://en.wikipedia.org/wiki/ligand ligand]. Known structural/functional Sites: <scene name='pdbsite=AC1:Po4+Binding+Site+For+Residue+A+157'>AC1</scene>, <scene name='pdbsite=AC2:Po4+Binding+Site+For+Residue+A+158'>AC2</scene> and <scene name='pdbsite=AC3:Po4+Binding+Site+For+Residue+B+157'>AC3</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BRC OCA].  
<StructureSection load='3brc' size='340' side='right'caption='[[3brc]], [[Resolution|resolution]] 1.60&Aring;' scene=''>
[[Category: Methanothermobacter thermautotrophicus str. delta h]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[3brc]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanothermobacter_thermautotrophicus_str._Delta_H Methanothermobacter thermautotrophicus str. Delta H]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BRC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BRC FirstGlance]. <br>
[[Category: Edwards, A M.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6&#8491;</td></tr>
[[Category: Evdokimova, E.]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
[[Category: Joachimiak, A.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3brc FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3brc OCA], [https://pdbe.org/3brc PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3brc RCSB], [https://www.ebi.ac.uk/pdbsum/3brc PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3brc ProSAT], [https://www.topsan.org/Proteins/MCSG/3brc TOPSAN]</span></td></tr>
[[Category: Kudritska, M.]]
</table>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
== Function ==
[[Category: Savchenko, A.]]
[https://www.uniprot.org/uniprot/O27213_METTH O27213_METTH]  
[[Category: Zhang, R.]]
== Evolutionary Conservation ==
[[Category: PO4]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: conserved protein]]
Check<jmol>
[[Category: mcsg]]
  <jmolCheckbox>
[[Category: methanobacterium thermoautotrophicum]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/br/3brc_consurf.spt"</scriptWhenChecked>
[[Category: midwest center for structural genomics]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: protein structure initiative]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: psi-2]]
  </jmolCheckbox>
[[Category: structural genomics]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3brc ConSurf].
[[Category: unknown function]]
<div style="clear:both"></div>
 
__TOC__
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:07:17 2008''
</StructureSection>
[[Category: Large Structures]]
[[Category: Methanothermobacter thermautotrophicus str. Delta H]]
[[Category: Edwards AM]]
[[Category: Evdokimova E]]
[[Category: Joachimiak A]]
[[Category: Kudritska M]]
[[Category: Savchenko A]]
[[Category: Zhang R]]
Retrieved from "https://proteopedia.org/3brc"