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New page: left|200px<br /><applet load="3byw" size="350" color="white" frame="true" align="right" spinBox="true" caption="3byw, resolution 2.35Å" /> '''Crystal structure of...
 
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[[Image:3byw.jpg|left|200px]]<br /><applet load="3byw" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3byw, resolution 2.35&Aring;" />
'''Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae'''<br />


==About this Structure==
==Crystal structure of an extracellular domain of arabinofuranosyltransferase from Corynebacterium diphtheriae==
3BYW is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Corynebacterium_diphtheriae_nctc_13129 Corynebacterium diphtheriae nctc 13129] with <scene name='pdbligand=ZN:'>ZN</scene> and <scene name='pdbligand=ACT:'>ACT</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Zn+Binding+Site+For+Residue+D+1'>AC1</scene>, <scene name='pdbsite=AC2:Zn+Binding+Site+For+Residue+C+2'>AC2</scene>, <scene name='pdbsite=AC3:Zn+Binding+Site+For+Residue+E+3'>AC3</scene>, <scene name='pdbsite=AC4:Zn+Binding+Site+For+Residue+F+4'>AC4</scene>, <scene name='pdbsite=AC5:Zn+Binding+Site+For+Residue+G+5'>AC5</scene>, <scene name='pdbsite=AC6:Zn+Binding+Site+For+Residue+B+6'>AC6</scene>, <scene name='pdbsite=AC7:Zn+Binding+Site+For+Residue+A+7'>AC7</scene>, <scene name='pdbsite=AC8:Zn+Binding+Site+For+Residue+E+9'>AC8</scene>, <scene name='pdbsite=AC9:Zn+Binding+Site+For+Residue+E+10'>AC9</scene>, <scene name='pdbsite=BC1:Zn+Binding+Site+For+Residue+F+11'>BC1</scene>, <scene name='pdbsite=BC2:Zn+Binding+Site+For+Residue+D+13'>BC2</scene>, <scene name='pdbsite=BC3:Zn+Binding+Site+For+Residue+A+14'>BC3</scene>, <scene name='pdbsite=BC4:Zn+Binding+Site+For+Residue+C+16'>BC4</scene>, <scene name='pdbsite=BC5:Zn+Binding+Site+For+Residue+D+18'>BC5</scene>, <scene name='pdbsite=BC6:Zn+Binding+Site+For+Residue+E+19'>BC6</scene>, <scene name='pdbsite=BC7:Act+Binding+Site+For+Residue+B+1'>BC7</scene>, <scene name='pdbsite=BC8:Act+Binding+Site+For+Residue+D+2'>BC8</scene>, <scene name='pdbsite=BC9:Act+Binding+Site+For+Residue+G+3'>BC9</scene>, <scene name='pdbsite=CC1:Act+Binding+Site+For+Residue+E+4'>CC1</scene>, <scene name='pdbsite=CC2:Act+Binding+Site+For+Residue+E+5'>CC2</scene>, <scene name='pdbsite=CC3:Act+Binding+Site+For+Residue+C+6'>CC3</scene>, <scene name='pdbsite=CC4:Act+Binding+Site+For+Residue+D+8'>CC4</scene>, <scene name='pdbsite=CC5:Act+Binding+Site+For+Residue+B+9'>CC5</scene>, <scene name='pdbsite=CC6:Act+Binding+Site+For+Residue+H+10'>CC6</scene>, <scene name='pdbsite=CC7:Act+Binding+Site+For+Residue+D+11'>CC7</scene>, <scene name='pdbsite=CC8:Act+Binding+Site+For+Residue+A+12'>CC8</scene>, <scene name='pdbsite=CC9:Act+Binding+Site+For+Residue+B+13'>CC9</scene> and <scene name='pdbsite=DC1:Act+Binding+Site+For+Residue+E+14'>DC1</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BYW OCA].  
<StructureSection load='3byw' size='340' side='right'caption='[[3byw]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
[[Category: Corynebacterium diphtheriae nctc 13129]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[3byw]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Cordi Cordi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3BYW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3BYW FirstGlance]. <br>
[[Category: Abdullah, J.]]
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
[[Category: Hatzos, C.]]
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
[[Category: Joachimiak, A.]]
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DIP0159 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=257309 CORDI])</td></tr>
[[Category: MCSG, Midwest Center for Structural Genomics.]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3byw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3byw OCA], [https://pdbe.org/3byw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3byw RCSB], [https://www.ebi.ac.uk/pdbsum/3byw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3byw ProSAT], [https://www.topsan.org/Proteins/MCSG/3byw TOPSAN]</span></td></tr>
[[Category: Tan, K.]]
</table>
[[Category: ACT]]
== Evolutionary Conservation ==
[[Category: ZN]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: apc90585 2]]
Check<jmol>
[[Category: arabinofuranosyltransferase]]
  <jmolCheckbox>
[[Category: corynebacterium diphtheriae]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/by/3byw_consurf.spt"</scriptWhenChecked>
[[Category: extracellular domain]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
[[Category: mcsg]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: midwest center for structural genomics]]
  </jmolCheckbox>
[[Category: protein structure initiative]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3byw ConSurf].
[[Category: psi-2]]
<div style="clear:both"></div>
[[Category: structural genomics]]
__TOC__
 
</StructureSection>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:07:58 2008''
[[Category: Cordi]]
[[Category: Large Structures]]
[[Category: Abdullah, J]]
[[Category: Hatzos, C]]
[[Category: Joachimiak, A]]
[[Category: Structural genomic]]
[[Category: Tan, K]]
[[Category: Apc90585 2]]
[[Category: Arabinofuranosyltransferase]]
[[Category: Corynebacterium diphtheriae]]
[[Category: Extracellular domain]]
[[Category: Mcsg]]
[[Category: PSI, Protein structure initiative]]
[[Category: Transferase]]
Retrieved from "https://proteopedia.org/3byw"