3c6c: Difference between revisions

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New page: left|200px<br /><applet load="3c6c" size="350" color="white" frame="true" align="right" spinBox="true" caption="3c6c, resolution 1.720Å" /> '''Crystal structure o...
 
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[[Image:3c6c.jpg|left|200px]]<br /><applet load="3c6c" size="350" color="white" frame="true" align="right" spinBox="true"
caption="3c6c, resolution 1.720&Aring;" />
'''Crystal structure of 3-keto-5-aminohexanoate cleavage enzyme (YP_293392.1) from Ralstonia eutropha JMP134 at 1.72 A resolution'''<br />


==About this Structure==
==Crystal structure of a putative 3-keto-5-aminohexanoate cleavage enzyme (reut_c6226) from ralstonia eutropha jmp134 at 1.72 A resolution==
3C6C is a [http://en.wikipedia.org/wiki/Single_protein Single protein] structure of sequence from [http://en.wikipedia.org/wiki/Ralstonia_eutropha_jmp134 Ralstonia eutropha jmp134] with <scene name='pdbligand=NI:'>NI</scene>, <scene name='pdbligand=ACT:'>ACT</scene>, <scene name='pdbligand=EDO:'>EDO</scene> and <scene name='pdbligand=PEG:'>PEG</scene> as [http://en.wikipedia.org/wiki/ligands ligands]. Known structural/functional Sites: <scene name='pdbsite=AC1:Ni+Binding+Site+For+Residue+A+298'>AC1</scene>, <scene name='pdbsite=AC2:Act+Binding+Site+For+Residue+A+299'>AC2</scene>, <scene name='pdbsite=AC3:Edo+Binding+Site+For+Residue+A+300'>AC3</scene>, <scene name='pdbsite=AC4:Edo+Binding+Site+For+Residue+A+301'>AC4</scene>, <scene name='pdbsite=AC5:Edo+Binding+Site+For+Residue+A+302'>AC5</scene> and <scene name='pdbsite=AC6:Peg+Binding+Site+For+Residue+A+303'>AC6</scene>. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6C OCA].
<StructureSection load='3c6c' size='340' side='right'caption='[[3c6c]], [[Resolution|resolution]] 1.72&Aring;' scene=''>
[[Category: Ralstonia eutropha jmp134]]
== Structural highlights ==
[[Category: Single protein]]
<table><tr><td colspan='2'>[[3c6c]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Cupriavidus_pinatubonensis_JMP134 Cupriavidus pinatubonensis JMP134]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3C6C OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3C6C FirstGlance]. <br>
[[Category: JCSG, Joint Center for Structural Genomics.]]
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.72&#8491;</td></tr>
[[Category: ACT]]
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=NI:NICKEL+(II)+ION'>NI</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene></td></tr>
[[Category: EDO]]
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3c6c FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3c6c OCA], [https://pdbe.org/3c6c PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3c6c RCSB], [https://www.ebi.ac.uk/pdbsum/3c6c PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3c6c ProSAT], [https://www.topsan.org/Proteins/JCSG/3c6c TOPSAN]</span></td></tr>
[[Category: NI]]
</table>
[[Category: PEG]]
== Function ==
[[Category: 3-keto-5-aminohexanoate cleavage enzyme]]
[https://www.uniprot.org/uniprot/Q46MU0_CUPPJ Q46MU0_CUPPJ]  
[[Category: jcsg]]
== Evolutionary Conservation ==
[[Category: joint center for structural genomics]]
[[Image:Consurf_key_small.gif|200px|right]]
[[Category: plasmid]]
Check<jmol>
[[Category: prokaryotic protein of unknown function (duf849)]]
  <jmolCheckbox>
[[Category: protein structure initiative]]
    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/c6/3c6c_consurf.spt"</scriptWhenChecked>
[[Category: psi-2]]
    <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
[[Category: structural genomics]]
    <text>to colour the structure by Evolutionary Conservation</text>
[[Category: unknown function]]
  </jmolCheckbox>
[[Category: yp_293392 1]]
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=3c6c ConSurf].
 
<div style="clear:both"></div>
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Thu Feb 21 19:08:37 2008''
__TOC__
</StructureSection>
[[Category: Cupriavidus pinatubonensis JMP134]]
[[Category: Large Structures]]
Retrieved from "https://proteopedia.org/3c6c"